Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12915

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS12910 and LU632_RS12915 are separated by 14 nucleotidesLU632_RS12915 and galU are separated by 27 nucleotides LU632_RS12910: LU632_RS12910 - NAD-dependent epimerase, at 2,461,382 to 2,462,389 _RS12910 LU632_RS12915: LU632_RS12915 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,462,404 to 2,463,744 _RS12915 LU632_RS12920: galU - UTP--glucose-1-phosphate uridylyltransferase GalU, at 2,463,772 to 2,464,680 galU Position (kb) 2462 2463 2464Strain fitness (log2 ratio) -1 0 1 2at 2461.470 kb on + strandat 2461.575 kb on + strand, within LU632_RS12910at 2461.636 kb on + strand, within LU632_RS12910at 2461.675 kb on + strand, within LU632_RS12910at 2461.676 kb on - strand, within LU632_RS12910at 2461.731 kb on + strand, within LU632_RS12910at 2461.732 kb on - strand, within LU632_RS12910at 2461.766 kb on + strand, within LU632_RS12910at 2461.767 kb on - strand, within LU632_RS12910at 2461.773 kb on - strand, within LU632_RS12910at 2461.894 kb on - strand, within LU632_RS12910at 2462.383 kb on - strandat 2462.418 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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2,461,470 + -0.0
2,461,575 + LU632_RS12910 0.19 +1.0
2,461,636 + LU632_RS12910 0.25 -0.6
2,461,675 + LU632_RS12910 0.29 -0.0
2,461,676 - LU632_RS12910 0.29 -0.0
2,461,731 + LU632_RS12910 0.35 +2.0
2,461,732 - LU632_RS12910 0.35 -0.0
2,461,766 + LU632_RS12910 0.38 -0.6
2,461,767 - LU632_RS12910 0.38 -1.4
2,461,773 - LU632_RS12910 0.39 -1.0
2,461,894 - LU632_RS12910 0.51 -1.0
2,462,383 - +1.0
2,462,418 + -1.4

Or see this region's nucleotide sequence