Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtD and mdtC are separated by 80 nucleotides mdtC and LU632_RS08690 overlap by 4 nucleotides
LU632_RS08680: mdtD - multidrug transporter subunit MdtD, at 1,626,909 to 1,628,229
mdtD
LU632_RS08685: mdtC - multidrug efflux RND transporter permease subunit MdtC, at 1,628,310 to 1,631,384
mdtC
LU632_RS08690: LU632_RS08690 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 1,631,381 to 1,634,506
_RS08690
Position (kb) 1628
1629
1630
1631
1632 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1627.319 kb on + strand, within mdtD at 1627.323 kb on + strand, within mdtD at 1627.323 kb on + strand, within mdtD at 1627.324 kb on - strand, within mdtD at 1627.371 kb on - strand, within mdtD at 1627.377 kb on + strand, within mdtD at 1627.377 kb on + strand, within mdtD at 1627.379 kb on + strand, within mdtD at 1627.379 kb on + strand, within mdtD at 1627.386 kb on - strand, within mdtD at 1627.386 kb on - strand, within mdtD at 1627.467 kb on + strand, within mdtD at 1627.470 kb on - strand, within mdtD at 1627.470 kb on - strand, within mdtD at 1627.528 kb on + strand, within mdtD at 1627.529 kb on - strand, within mdtD at 1627.545 kb on + strand, within mdtD at 1627.546 kb on - strand, within mdtD at 1627.595 kb on - strand, within mdtD at 1627.661 kb on - strand, within mdtD at 1627.661 kb on - strand, within mdtD at 1627.795 kb on + strand, within mdtD at 1627.824 kb on + strand, within mdtD at 1627.897 kb on + strand, within mdtD at 1627.897 kb on + strand, within mdtD at 1627.898 kb on - strand, within mdtD at 1627.898 kb on - strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.999 kb on + strand, within mdtD at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.158 kb on + strand at 1628.158 kb on + strand at 1628.159 kb on - strand at 1628.164 kb on + strand at 1628.199 kb on + strand at 1628.199 kb on + strand at 1628.200 kb on - strand at 1628.203 kb on + strand at 1628.254 kb on + strand at 1628.255 kb on - strand at 1628.255 kb on - strand at 1628.356 kb on - strand at 1628.366 kb on + strand at 1628.366 kb on + strand at 1628.368 kb on + strand at 1628.368 kb on + strand at 1628.368 kb on + strand at 1628.368 kb on + strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.374 kb on + strand at 1628.481 kb on + strand at 1628.481 kb on + strand at 1628.482 kb on - strand at 1628.525 kb on + strand at 1628.525 kb on + strand at 1628.525 kb on + strand at 1628.526 kb on - strand at 1628.526 kb on - strand at 1628.560 kb on - strand at 1628.621 kb on + strand, within mdtC at 1628.621 kb on + strand, within mdtC at 1628.622 kb on - strand, within mdtC at 1628.622 kb on - strand, within mdtC at 1628.622 kb on - strand, within mdtC at 1628.638 kb on - strand, within mdtC at 1628.638 kb on - strand, within mdtC at 1628.648 kb on + strand, within mdtC at 1628.648 kb on + strand, within mdtC at 1628.652 kb on + strand, within mdtC at 1628.750 kb on + strand, within mdtC at 1628.751 kb on - strand, within mdtC at 1628.767 kb on + strand, within mdtC at 1628.776 kb on + strand, within mdtC at 1628.777 kb on - strand, within mdtC at 1628.777 kb on - strand, within mdtC at 1628.797 kb on + strand, within mdtC at 1628.798 kb on - strand, within mdtC at 1628.823 kb on + strand, within mdtC at 1629.099 kb on + strand, within mdtC at 1629.100 kb on - strand, within mdtC at 1629.100 kb on - strand, within mdtC at 1629.122 kb on - strand, within mdtC at 1629.142 kb on - strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.170 kb on - strand, within mdtC at 1629.170 kb on - strand, within mdtC at 1629.265 kb on + strand, within mdtC at 1629.265 kb on + strand, within mdtC at 1629.266 kb on - strand, within mdtC at 1629.266 kb on - strand, within mdtC at 1629.400 kb on + strand, within mdtC at 1629.401 kb on - strand, within mdtC at 1629.438 kb on + strand, within mdtC at 1629.438 kb on + strand, within mdtC at 1629.439 kb on - strand, within mdtC at 1629.439 kb on - strand, within mdtC at 1629.439 kb on - strand, within mdtC at 1629.557 kb on + strand, within mdtC at 1629.558 kb on - strand, within mdtC at 1629.558 kb on - strand, within mdtC at 1629.567 kb on - strand, within mdtC at 1629.700 kb on + strand, within mdtC at 1629.701 kb on - strand, within mdtC at 1629.763 kb on + strand, within mdtC at 1629.777 kb on + strand, within mdtC at 1629.777 kb on + strand, within mdtC at 1629.831 kb on + strand, within mdtC at 1629.831 kb on + strand, within mdtC at 1629.831 kb on + strand, within mdtC at 1629.832 kb on - strand, within mdtC at 1629.832 kb on - strand, within mdtC at 1630.252 kb on + strand, within mdtC at 1630.252 kb on + strand, within mdtC at 1630.252 kb on + strand, within mdtC at 1630.253 kb on - strand, within mdtC at 1630.253 kb on - strand, within mdtC at 1630.455 kb on - strand, within mdtC at 1630.455 kb on - strand, within mdtC at 1630.509 kb on - strand, within mdtC at 1630.509 kb on - strand, within mdtC at 1630.539 kb on + strand, within mdtC at 1630.642 kb on + strand, within mdtC at 1630.647 kb on + strand, within mdtC at 1630.647 kb on + strand, within mdtC at 1630.647 kb on + strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.650 kb on + strand, within mdtC at 1630.799 kb on + strand, within mdtC at 1630.799 kb on + strand, within mdtC at 1630.915 kb on + strand, within mdtC at 1630.916 kb on - strand, within mdtC at 1630.916 kb on - strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.922 kb on - strand, within mdtC at 1630.922 kb on - strand, within mdtC at 1630.939 kb on + strand, within mdtC at 1630.940 kb on - strand, within mdtC at 1630.967 kb on + strand, within mdtC at 1631.031 kb on + strand, within mdtC at 1631.049 kb on - strand, within mdtC at 1631.062 kb on - strand, within mdtC at 1631.096 kb on - strand at 1631.250 kb on - strand at 1631.250 kb on - strand at 1631.446 kb on - strand at 1631.446 kb on - strand at 1631.446 kb on - strand at 1631.628 kb on + strand at 1631.628 kb on + strand at 1631.629 kb on - strand at 1631.629 kb on - strand at 1631.630 kb on + strand at 1631.630 kb on + strand at 1631.631 kb on - strand at 1631.714 kb on - strand, within LU632_RS08690 at 1631.714 kb on - strand, within LU632_RS08690 at 1631.729 kb on - strand, within LU632_RS08690 at 1631.729 kb on - strand, within LU632_RS08690 at 1631.729 kb on - strand, within LU632_RS08690 at 1631.848 kb on - strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.996 kb on - strand, within LU632_RS08690 at 1632.240 kb on + strand, within LU632_RS08690 at 1632.240 kb on + strand, within LU632_RS08690 at 1632.276 kb on + strand, within LU632_RS08690 at 1632.276 kb on + strand, within LU632_RS08690 at 1632.276 kb on + strand, within LU632_RS08690 at 1632.277 kb on - strand, within LU632_RS08690 at 1632.277 kb on - strand, within LU632_RS08690 at 1632.379 kb on + strand, within LU632_RS08690 at 1632.380 kb on - strand, within LU632_RS08690 at 1632.380 kb on - strand, within LU632_RS08690 at 1632.382 kb on + strand, within LU632_RS08690 at 1632.383 kb on - strand, within LU632_RS08690
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 1,627,319 + mdtD LU632_RS08680 0.31 -0.3 1,627,323 + mdtD LU632_RS08680 0.31 -0.2 1,627,323 + mdtD LU632_RS08680 0.31 -0.4 1,627,324 - mdtD LU632_RS08680 0.31 -0.5 1,627,371 - mdtD LU632_RS08680 0.35 +1.0 1,627,377 + mdtD LU632_RS08680 0.35 +0.1 1,627,377 + mdtD LU632_RS08680 0.35 -0.6 1,627,379 + mdtD LU632_RS08680 0.36 -0.7 1,627,379 + mdtD LU632_RS08680 0.36 -1.0 1,627,386 - mdtD LU632_RS08680 0.36 +0.9 1,627,386 - mdtD LU632_RS08680 0.36 -1.0 1,627,467 + mdtD LU632_RS08680 0.42 +0.2 1,627,470 - mdtD LU632_RS08680 0.42 +0.5 1,627,470 - mdtD LU632_RS08680 0.42 +1.7 1,627,528 + mdtD LU632_RS08680 0.47 +2.5 1,627,529 - mdtD LU632_RS08680 0.47 -0.3 1,627,545 + mdtD LU632_RS08680 0.48 +0.7 1,627,546 - mdtD LU632_RS08680 0.48 +0.2 1,627,595 - mdtD LU632_RS08680 0.52 +0.2 1,627,661 - mdtD LU632_RS08680 0.57 -0.3 1,627,661 - mdtD LU632_RS08680 0.57 -0.1 1,627,795 + mdtD LU632_RS08680 0.67 -0.2 1,627,824 + mdtD LU632_RS08680 0.69 -1.5 1,627,897 + mdtD LU632_RS08680 0.75 -0.8 1,627,897 + mdtD LU632_RS08680 0.75 +0.6 1,627,898 - mdtD LU632_RS08680 0.75 +0.2 1,627,898 - mdtD LU632_RS08680 0.75 -0.1 1,627,908 + mdtD LU632_RS08680 0.76 +0.3 1,627,908 + mdtD LU632_RS08680 0.76 +1.2 1,627,908 + mdtD LU632_RS08680 0.76 +0.2 1,627,908 + mdtD LU632_RS08680 0.76 -0.4 1,627,908 + mdtD LU632_RS08680 0.76 +0.2 1,627,908 + mdtD LU632_RS08680 0.76 +0.4 1,627,908 + mdtD LU632_RS08680 0.76 -0.3 1,627,908 + mdtD LU632_RS08680 0.76 -0.7 1,627,909 - mdtD LU632_RS08680 0.76 +1.1 1,627,909 - mdtD LU632_RS08680 0.76 +0.0 1,627,909 - mdtD LU632_RS08680 0.76 -0.2 1,627,909 - mdtD LU632_RS08680 0.76 -0.1 1,627,909 - mdtD LU632_RS08680 0.76 -0.0 1,627,909 - mdtD LU632_RS08680 0.76 +1.4 1,627,909 - mdtD LU632_RS08680 0.76 +1.2 1,627,909 - mdtD LU632_RS08680 0.76 -0.7 1,627,909 - mdtD LU632_RS08680 0.76 +0.1 1,627,999 + mdtD LU632_RS08680 0.83 +0.9 1,628,123 + -1.5 1,628,123 + +1.9 1,628,123 + -0.7 1,628,123 + +0.3 1,628,123 + -0.4 1,628,123 + -0.5 1,628,158 + +0.6 1,628,158 + -0.7 1,628,159 - -0.1 1,628,164 + -0.9 1,628,199 + +0.4 1,628,199 + +0.2 1,628,200 - -1.4 1,628,203 + -0.5 1,628,254 + -0.2 1,628,255 - +0.3 1,628,255 - +0.6 1,628,356 - -0.1 1,628,366 + -0.1 1,628,366 + +1.1 1,628,368 + +0.2 1,628,368 + +1.4 1,628,368 + -0.0 1,628,368 + -0.0 1,628,369 - +1.2 1,628,369 - +0.5 1,628,369 - -0.9 1,628,369 - +0.6 1,628,369 - -0.2 1,628,369 - +0.3 1,628,374 + -1.2 1,628,481 + +0.9 1,628,481 + -0.5 1,628,482 - -0.5 1,628,525 + +0.5 1,628,525 + -0.3 1,628,525 + -0.6 1,628,526 - +0.3 1,628,526 - +0.4 1,628,560 - +0.2 1,628,621 + mdtC LU632_RS08685 0.10 -0.5 1,628,621 + mdtC LU632_RS08685 0.10 -0.2 1,628,622 - mdtC LU632_RS08685 0.10 -0.3 1,628,622 - mdtC LU632_RS08685 0.10 +0.5 1,628,622 - mdtC LU632_RS08685 0.10 -0.2 1,628,638 - mdtC LU632_RS08685 0.11 +0.4 1,628,638 - mdtC LU632_RS08685 0.11 -0.5 1,628,648 + mdtC LU632_RS08685 0.11 -0.3 1,628,648 + mdtC LU632_RS08685 0.11 +0.1 1,628,652 + mdtC LU632_RS08685 0.11 +0.6 1,628,750 + mdtC LU632_RS08685 0.14 -0.2 1,628,751 - mdtC LU632_RS08685 0.14 +0.9 1,628,767 + mdtC LU632_RS08685 0.15 -0.6 1,628,776 + mdtC LU632_RS08685 0.15 -0.9 1,628,777 - mdtC LU632_RS08685 0.15 -0.6 1,628,777 - mdtC LU632_RS08685 0.15 -0.3 1,628,797 + mdtC LU632_RS08685 0.16 -0.7 1,628,798 - mdtC LU632_RS08685 0.16 +0.1 1,628,823 + mdtC LU632_RS08685 0.17 +0.1 1,629,099 + mdtC LU632_RS08685 0.26 -0.1 1,629,100 - mdtC LU632_RS08685 0.26 +0.1 1,629,100 - mdtC LU632_RS08685 0.26 +0.1 1,629,122 - mdtC LU632_RS08685 0.26 +0.0 1,629,142 - mdtC LU632_RS08685 0.27 -0.6 1,629,169 + mdtC LU632_RS08685 0.28 -0.1 1,629,169 + mdtC LU632_RS08685 0.28 -1.1 1,629,169 + mdtC LU632_RS08685 0.28 +1.4 1,629,169 + mdtC LU632_RS08685 0.28 -0.0 1,629,169 + mdtC LU632_RS08685 0.28 +0.6 1,629,169 + mdtC LU632_RS08685 0.28 +0.2 1,629,170 - mdtC LU632_RS08685 0.28 +0.3 1,629,170 - mdtC LU632_RS08685 0.28 +0.9 1,629,265 + mdtC LU632_RS08685 0.31 +0.3 1,629,265 + mdtC LU632_RS08685 0.31 -0.5 1,629,266 - mdtC LU632_RS08685 0.31 -1.7 1,629,266 - mdtC LU632_RS08685 0.31 +0.0 1,629,400 + mdtC LU632_RS08685 0.35 -0.1 1,629,401 - mdtC LU632_RS08685 0.35 +0.3 1,629,438 + mdtC LU632_RS08685 0.37 -0.3 1,629,438 + mdtC LU632_RS08685 0.37 -0.1 1,629,439 - mdtC LU632_RS08685 0.37 -0.7 1,629,439 - mdtC LU632_RS08685 0.37 +0.9 1,629,439 - mdtC LU632_RS08685 0.37 -0.1 1,629,557 + mdtC LU632_RS08685 0.41 +0.2 1,629,558 - mdtC LU632_RS08685 0.41 +0.2 1,629,558 - mdtC LU632_RS08685 0.41 +0.9 1,629,567 - mdtC LU632_RS08685 0.41 -1.2 1,629,700 + mdtC LU632_RS08685 0.45 -1.3 1,629,701 - mdtC LU632_RS08685 0.45 +0.3 1,629,763 + mdtC LU632_RS08685 0.47 +0.4 1,629,777 + mdtC LU632_RS08685 0.48 +0.2 1,629,777 + mdtC LU632_RS08685 0.48 -0.1 1,629,831 + mdtC LU632_RS08685 0.49 +0.0 1,629,831 + mdtC LU632_RS08685 0.49 +0.3 1,629,831 + mdtC LU632_RS08685 0.49 +0.2 1,629,832 - mdtC LU632_RS08685 0.49 +0.1 1,629,832 - mdtC LU632_RS08685 0.49 -0.0 1,630,252 + mdtC LU632_RS08685 0.63 -0.4 1,630,252 + mdtC LU632_RS08685 0.63 +0.2 1,630,252 + mdtC LU632_RS08685 0.63 -0.4 1,630,253 - mdtC LU632_RS08685 0.63 -1.4 1,630,253 - mdtC LU632_RS08685 0.63 -0.7 1,630,455 - mdtC LU632_RS08685 0.70 -0.5 1,630,455 - mdtC LU632_RS08685 0.70 +0.5 1,630,509 - mdtC LU632_RS08685 0.72 +0.2 1,630,509 - mdtC LU632_RS08685 0.72 +0.8 1,630,539 + mdtC LU632_RS08685 0.72 -0.1 1,630,642 + mdtC LU632_RS08685 0.76 -0.8 1,630,647 + mdtC LU632_RS08685 0.76 -0.5 1,630,647 + mdtC LU632_RS08685 0.76 +0.6 1,630,647 + mdtC LU632_RS08685 0.76 +0.1 1,630,648 - mdtC LU632_RS08685 0.76 +1.0 1,630,648 - mdtC LU632_RS08685 0.76 -0.1 1,630,648 - mdtC LU632_RS08685 0.76 +0.1 1,630,648 - mdtC LU632_RS08685 0.76 +0.4 1,630,650 + mdtC LU632_RS08685 0.76 -0.2 1,630,799 + mdtC LU632_RS08685 0.81 -0.1 1,630,799 + mdtC LU632_RS08685 0.81 +1.0 1,630,915 + mdtC LU632_RS08685 0.85 +0.3 1,630,916 - mdtC LU632_RS08685 0.85 -0.5 1,630,916 - mdtC LU632_RS08685 0.85 +0.9 1,630,921 + mdtC LU632_RS08685 0.85 -0.1 1,630,921 + mdtC LU632_RS08685 0.85 +0.0 1,630,921 + mdtC LU632_RS08685 0.85 +0.1 1,630,921 + mdtC LU632_RS08685 0.85 -0.5 1,630,922 - mdtC LU632_RS08685 0.85 +0.7 1,630,922 - mdtC LU632_RS08685 0.85 +2.1 1,630,939 + mdtC LU632_RS08685 0.85 +1.5 1,630,940 - mdtC LU632_RS08685 0.86 -0.2 1,630,967 + mdtC LU632_RS08685 0.86 +0.3 1,631,031 + mdtC LU632_RS08685 0.88 -1.4 1,631,049 - mdtC LU632_RS08685 0.89 -0.7 1,631,062 - mdtC LU632_RS08685 0.89 +0.7 1,631,096 - +0.3 1,631,250 - -0.5 1,631,250 - -0.5 1,631,446 - +0.2 1,631,446 - +0.1 1,631,446 - +1.5 1,631,628 + -0.3 1,631,628 + -1.1 1,631,629 - +0.9 1,631,629 - -0.2 1,631,630 + -1.0 1,631,630 + -0.7 1,631,631 - -1.9 1,631,714 - LU632_RS08690 0.11 +0.1 1,631,714 - LU632_RS08690 0.11 -0.2 1,631,729 - LU632_RS08690 0.11 -1.4 1,631,729 - LU632_RS08690 0.11 -0.5 1,631,729 - LU632_RS08690 0.11 -0.7 1,631,848 - LU632_RS08690 0.15 -0.2 1,631,868 + LU632_RS08690 0.16 +0.6 1,631,868 + LU632_RS08690 0.16 -0.1 1,631,868 + LU632_RS08690 0.16 -0.1 1,631,868 + LU632_RS08690 0.16 -0.3 1,631,869 - LU632_RS08690 0.16 +0.3 1,631,869 - LU632_RS08690 0.16 +0.1 1,631,869 - LU632_RS08690 0.16 -0.5 1,631,869 - LU632_RS08690 0.16 -1.5 1,631,869 - LU632_RS08690 0.16 +0.3 1,631,869 - LU632_RS08690 0.16 -0.8 1,631,869 - LU632_RS08690 0.16 -0.4 1,631,869 - LU632_RS08690 0.16 +0.9 1,631,869 - LU632_RS08690 0.16 -0.2 1,631,869 - LU632_RS08690 0.16 +0.2 1,631,996 - LU632_RS08690 0.20 +0.4 1,632,240 + LU632_RS08690 0.27 +0.4 1,632,240 + LU632_RS08690 0.27 +0.6 1,632,276 + LU632_RS08690 0.29 +0.4 1,632,276 + LU632_RS08690 0.29 -0.6 1,632,276 + LU632_RS08690 0.29 -1.7 1,632,277 - LU632_RS08690 0.29 -0.3 1,632,277 - LU632_RS08690 0.29 -1.7 1,632,379 + LU632_RS08690 0.32 +0.9 1,632,380 - LU632_RS08690 0.32 +0.2 1,632,380 - LU632_RS08690 0.32 -0.3 1,632,382 + LU632_RS08690 0.32 -0.4 1,632,383 - LU632_RS08690 0.32 -0.4
Or see this region's nucleotide sequence