Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06585

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgltX and LU632_RS06565 are separated by 272 nucleotidesLU632_RS06565 and LU632_RS06570 are separated by 49 nucleotidesLU632_RS06570 and LU632_RS06575 are separated by 30 nucleotidesLU632_RS06575 and LU632_RS06580 are separated by 4 nucleotidesLU632_RS06580 and LU632_RS06585 are separated by 300 nucleotidesLU632_RS06585 and LU632_RS06590 are separated by 252 nucleotides LU632_RS06560: gltX - glutamate--tRNA ligase, at 1,262,867 to 1,264,279 gltX LU632_RS06565: LU632_RS06565 - tRNA-Val, at 1,264,552 to 1,264,627 _RS06565 LU632_RS06570: LU632_RS06570 - tRNA-Val, at 1,264,677 to 1,264,752 _RS06570 LU632_RS06575: LU632_RS06575 - tRNA-Val, at 1,264,783 to 1,264,858 _RS06575 LU632_RS06580: LU632_RS06580 - tRNA-Lys, at 1,264,863 to 1,264,938 _RS06580 LU632_RS06585: LU632_RS06585 - FlxA-like family protein, at 1,265,239 to 1,265,361 _RS06585 LU632_RS06590: LU632_RS06590 - LysR family transcriptional regulator, at 1,265,614 to 1,266,417 _RS06590 Position (kb) 1265 1266Strain fitness (log2 ratio) -2 -1 0 1 2at 1264.362 kb on - strandat 1264.443 kb on - strandat 1264.696 kb on + strand, within LU632_RS06570at 1264.756 kb on + strandat 1264.757 kb on - strandat 1264.941 kb on + strandat 1265.073 kb on - strandat 1265.073 kb on - strandat 1265.073 kb on - strandat 1265.105 kb on + strandat 1265.146 kb on - strandat 1265.146 kb on - strandat 1265.156 kb on - strandat 1265.181 kb on + strandat 1265.181 kb on + strandat 1265.186 kb on + strandat 1265.187 kb on - strandat 1265.187 kb on - strandat 1265.187 kb on - strandat 1265.187 kb on - strandat 1265.221 kb on - strandat 1265.323 kb on - strand, within LU632_RS06585at 1265.339 kb on + strand, within LU632_RS06585at 1265.372 kb on + strandat 1265.372 kb on + strandat 1265.372 kb on + strandat 1265.373 kb on - strandat 1265.373 kb on - strandat 1265.579 kb on + strandat 1265.641 kb on - strandat 1265.641 kb on - strandat 1265.699 kb on - strand, within LU632_RS06590at 1265.724 kb on + strand, within LU632_RS06590at 1265.724 kb on + strand, within LU632_RS06590at 1265.724 kb on + strand, within LU632_RS06590at 1265.724 kb on + strand, within LU632_RS06590at 1265.724 kb on + strand, within LU632_RS06590at 1265.724 kb on + strand, within LU632_RS06590at 1265.725 kb on - strand, within LU632_RS06590at 1265.756 kb on - strand, within LU632_RS06590at 1265.757 kb on + strand, within LU632_RS06590at 1265.757 kb on + strand, within LU632_RS06590at 1265.758 kb on - strand, within LU632_RS06590at 1265.787 kb on + strand, within LU632_RS06590at 1265.827 kb on - strand, within LU632_RS06590at 1265.934 kb on + strand, within LU632_RS06590at 1265.935 kb on - strand, within LU632_RS06590at 1266.139 kb on - strand, within LU632_RS06590at 1266.163 kb on + strand, within LU632_RS06590at 1266.164 kb on - strand, within LU632_RS06590at 1266.216 kb on + strand, within LU632_RS06590at 1266.280 kb on + strand, within LU632_RS06590at 1266.280 kb on + strand, within LU632_RS06590at 1266.282 kb on + strand, within LU632_RS06590at 1266.285 kb on + strand, within LU632_RS06590at 1266.285 kb on + strand, within LU632_RS06590at 1266.334 kb on - strand, within LU632_RS06590

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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1,264,362 - +0.1
1,264,443 - -0.6
1,264,696 + LU632_RS06570 0.25 -1.4
1,264,756 + +0.2
1,264,757 - -1.6
1,264,941 + +1.0
1,265,073 - +0.8
1,265,073 - -0.3
1,265,073 - -0.1
1,265,105 + +0.5
1,265,146 - -1.1
1,265,146 - -0.5
1,265,156 - -0.7
1,265,181 + +0.2
1,265,181 + -0.8
1,265,186 + -1.5
1,265,187 - -0.5
1,265,187 - -1.0
1,265,187 - -0.3
1,265,187 - -0.3
1,265,221 - -0.2
1,265,323 - LU632_RS06585 0.68 -0.5
1,265,339 + LU632_RS06585 0.81 -1.0
1,265,372 + +0.1
1,265,372 + -1.4
1,265,372 + -0.2
1,265,373 - -2.0
1,265,373 - +2.5
1,265,579 + -0.4
1,265,641 - -0.3
1,265,641 - +0.2
1,265,699 - LU632_RS06590 0.11 -0.4
1,265,724 + LU632_RS06590 0.14 -0.0
1,265,724 + LU632_RS06590 0.14 +0.3
1,265,724 + LU632_RS06590 0.14 -0.1
1,265,724 + LU632_RS06590 0.14 -0.0
1,265,724 + LU632_RS06590 0.14 -0.5
1,265,724 + LU632_RS06590 0.14 -0.8
1,265,725 - LU632_RS06590 0.14 -0.3
1,265,756 - LU632_RS06590 0.18 -0.1
1,265,757 + LU632_RS06590 0.18 -0.1
1,265,757 + LU632_RS06590 0.18 -1.1
1,265,758 - LU632_RS06590 0.18 -0.1
1,265,787 + LU632_RS06590 0.22 -0.2
1,265,827 - LU632_RS06590 0.26 +0.8
1,265,934 + LU632_RS06590 0.40 -0.2
1,265,935 - LU632_RS06590 0.40 +0.4
1,266,139 - LU632_RS06590 0.65 +0.4
1,266,163 + LU632_RS06590 0.68 -0.4
1,266,164 - LU632_RS06590 0.68 -0.4
1,266,216 + LU632_RS06590 0.75 +0.9
1,266,280 + LU632_RS06590 0.83 -0.8
1,266,280 + LU632_RS06590 0.83 -0.6
1,266,282 + LU632_RS06590 0.83 +0.0
1,266,285 + LU632_RS06590 0.83 -0.2
1,266,285 + LU632_RS06590 0.83 +0.7
1,266,334 - LU632_RS06590 0.90 -0.3

Or see this region's nucleotide sequence