Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06130

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS06125 and LU632_RS06130 overlap by 4 nucleotidesLU632_RS06130 and LU632_RS06135 are separated by 101 nucleotidesLU632_RS06135 and LU632_RS06140 are separated by 42 nucleotides LU632_RS06125: LU632_RS06125 - AAA family ATPase, at 1,168,456 to 1,168,998 _RS06125 LU632_RS06130: LU632_RS06130 - hypothetical protein, at 1,168,995 to 1,169,159 _RS06130 LU632_RS06135: LU632_RS06135 - hypothetical protein, at 1,169,261 to 1,169,647 _RS06135 LU632_RS06140: LU632_RS06140 - aspartate aminotransferase family protein, at 1,169,690 to 1,170,934 _RS06140 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -1 0 1 2at 1167.998 kb on + strandat 1167.999 kb on - strandat 1168.059 kb on + strandat 1168.084 kb on + strandat 1168.084 kb on + strandat 1168.084 kb on + strandat 1168.085 kb on - strandat 1168.085 kb on - strandat 1168.085 kb on - strandat 1168.267 kb on + strandat 1168.326 kb on - strandat 1168.480 kb on + strandat 1168.480 kb on + strandat 1168.481 kb on - strandat 1168.519 kb on - strand, within LU632_RS06125at 1168.731 kb on - strand, within LU632_RS06125at 1168.812 kb on - strand, within LU632_RS06125at 1168.882 kb on + strand, within LU632_RS06125at 1168.889 kb on + strand, within LU632_RS06125at 1168.923 kb on + strand, within LU632_RS06125at 1168.923 kb on + strand, within LU632_RS06125at 1168.976 kb on + strandat 1169.027 kb on - strand, within LU632_RS06130at 1169.104 kb on + strand, within LU632_RS06130at 1169.105 kb on - strand, within LU632_RS06130at 1169.118 kb on + strand, within LU632_RS06130at 1169.118 kb on + strand, within LU632_RS06130at 1169.159 kb on + strandat 1169.159 kb on + strandat 1169.160 kb on - strandat 1169.169 kb on + strandat 1169.169 kb on + strandat 1169.169 kb on + strandat 1169.170 kb on - strandat 1169.228 kb on - strandat 1169.233 kb on - strandat 1169.237 kb on - strandat 1169.237 kb on - strandat 1169.262 kb on + strandat 1169.262 kb on + strandat 1169.262 kb on + strandat 1169.263 kb on - strandat 1169.385 kb on - strand, within LU632_RS06135at 1169.492 kb on - strand, within LU632_RS06135at 1169.502 kb on + strand, within LU632_RS06135at 1169.503 kb on - strand, within LU632_RS06135at 1169.564 kb on + strand, within LU632_RS06135at 1169.620 kb on + strandat 1169.626 kb on + strandat 1169.637 kb on + strandat 1169.638 kb on - strandat 1169.638 kb on - strandat 1169.641 kb on + strandat 1169.778 kb on + strandat 1169.778 kb on + strandat 1169.778 kb on + strandat 1169.861 kb on + strand, within LU632_RS06140at 1169.863 kb on + strand, within LU632_RS06140at 1169.863 kb on + strand, within LU632_RS06140at 1169.863 kb on + strand, within LU632_RS06140at 1169.863 kb on + strand, within LU632_RS06140at 1169.863 kb on + strand, within LU632_RS06140at 1169.864 kb on - strand, within LU632_RS06140at 1169.864 kb on - strand, within LU632_RS06140at 1169.864 kb on - strand, within LU632_RS06140at 1169.868 kb on - strand, within LU632_RS06140at 1169.868 kb on - strand, within LU632_RS06140at 1169.868 kb on - strand, within LU632_RS06140at 1169.977 kb on - strand, within LU632_RS06140

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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1,167,998 + -1.4
1,167,999 - +0.3
1,168,059 + -0.5
1,168,084 + -0.7
1,168,084 + -0.9
1,168,084 + -0.2
1,168,085 - +0.2
1,168,085 - +0.6
1,168,085 - -0.7
1,168,267 + +0.2
1,168,326 - +0.3
1,168,480 + -1.4
1,168,480 + -0.2
1,168,481 - -0.3
1,168,519 - LU632_RS06125 0.12 +0.5
1,168,731 - LU632_RS06125 0.51 +0.2
1,168,812 - LU632_RS06125 0.66 -0.3
1,168,882 + LU632_RS06125 0.78 -0.7
1,168,889 + LU632_RS06125 0.80 -1.0
1,168,923 + LU632_RS06125 0.86 +0.6
1,168,923 + LU632_RS06125 0.86 +0.0
1,168,976 + +0.5
1,169,027 - LU632_RS06130 0.19 -0.6
1,169,104 + LU632_RS06130 0.66 -0.7
1,169,105 - LU632_RS06130 0.67 +1.2
1,169,118 + LU632_RS06130 0.75 +0.4
1,169,118 + LU632_RS06130 0.75 +0.3
1,169,159 + +0.4
1,169,159 + +0.6
1,169,160 - +0.5
1,169,169 + +0.0
1,169,169 + +0.4
1,169,169 + -0.0
1,169,170 - -0.1
1,169,228 - +0.4
1,169,233 - +0.9
1,169,237 - -0.8
1,169,237 - -0.4
1,169,262 + -0.1
1,169,262 + -0.2
1,169,262 + -0.1
1,169,263 - +1.6
1,169,385 - LU632_RS06135 0.32 +0.9
1,169,492 - LU632_RS06135 0.60 -0.3
1,169,502 + LU632_RS06135 0.62 -0.4
1,169,503 - LU632_RS06135 0.63 +0.9
1,169,564 + LU632_RS06135 0.78 -0.6
1,169,620 + -0.8
1,169,626 + +1.9
1,169,637 + +0.4
1,169,638 - -0.7
1,169,638 - +0.3
1,169,641 + +0.5
1,169,778 + -0.0
1,169,778 + -0.7
1,169,778 + -0.7
1,169,861 + LU632_RS06140 0.14 -0.5
1,169,863 + LU632_RS06140 0.14 -0.7
1,169,863 + LU632_RS06140 0.14 +0.1
1,169,863 + LU632_RS06140 0.14 +0.4
1,169,863 + LU632_RS06140 0.14 -0.2
1,169,863 + LU632_RS06140 0.14 -0.4
1,169,864 - LU632_RS06140 0.14 +0.1
1,169,864 - LU632_RS06140 0.14 +0.1
1,169,864 - LU632_RS06140 0.14 +0.2
1,169,868 - LU632_RS06140 0.14 +0.5
1,169,868 - LU632_RS06140 0.14 +0.4
1,169,868 - LU632_RS06140 0.14 -0.1
1,169,977 - LU632_RS06140 0.23 -0.5

Or see this region's nucleotide sequence