Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04575 and LU632_RS04580 are separated by 89 nucleotides LU632_RS04580 and LU632_RS04585 are separated by 2 nucleotides LU632_RS04585 and LU632_RS04590 are separated by 61 nucleotides
LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289
_RS04575
LU632_RS04580: LU632_RS04580 - hypothetical protein, at 897,379 to 897,981
_RS04580
LU632_RS04585: LU632_RS04585 - contact-dependent growth inhibition system immunity protein, at 897,984 to 898,331
_RS04585
LU632_RS04590: LU632_RS04590 - IS481 family transposase, at 898,393 to 899,406
_RS04590
Position (kb) 897
898 Strain fitness (log2 ratio) -1
0
1
2 at 897.378 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.449 kb on + strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.586 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.759 kb on + strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 898.021 kb on + strand, within LU632_RS04585 at 898.022 kb on - strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.030 kb on - strand, within LU632_RS04585 at 898.045 kb on - strand, within LU632_RS04585 at 898.062 kb on - strand, within LU632_RS04585 at 898.084 kb on + strand, within LU632_RS04585 at 898.119 kb on - strand, within LU632_RS04585 at 898.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 897,378 + -0.1 897,436 + -0.3 897,436 + -0.5 897,436 + -1.5 897,436 + +0.9 897,436 + +0.0 897,437 - -0.3 897,437 - +0.4 897,437 - -0.4 897,437 - -0.6 897,449 + LU632_RS04580 0.12 -0.0 897,583 - LU632_RS04580 0.34 -0.4 897,583 - LU632_RS04580 0.34 +0.4 897,586 - LU632_RS04580 0.34 +0.9 897,747 - LU632_RS04580 0.61 -0.1 897,747 - LU632_RS04580 0.61 +0.2 897,747 - LU632_RS04580 0.61 -1.5 897,759 + LU632_RS04580 0.63 +1.9 897,762 - LU632_RS04580 0.64 +0.9 897,762 - LU632_RS04580 0.64 -0.6 897,762 - LU632_RS04580 0.64 +0.2 897,842 + LU632_RS04580 0.77 +0.3 897,842 + LU632_RS04580 0.77 -0.9 897,843 - LU632_RS04580 0.77 -1.0 897,843 - LU632_RS04580 0.77 +1.0 898,021 + LU632_RS04585 0.11 +0.0 898,022 - LU632_RS04585 0.11 +0.9 898,025 + LU632_RS04585 0.12 +0.2 898,025 + LU632_RS04585 0.12 -0.6 898,025 + LU632_RS04585 0.12 +0.6 898,025 + LU632_RS04585 0.12 +0.1 898,025 + LU632_RS04585 0.12 -1.5 898,026 - LU632_RS04585 0.12 -0.0 898,026 - LU632_RS04585 0.12 +1.2 898,029 + LU632_RS04585 0.13 +0.1 898,029 + LU632_RS04585 0.13 -1.0 898,030 - LU632_RS04585 0.13 +0.3 898,045 - LU632_RS04585 0.18 +0.5 898,062 - LU632_RS04585 0.22 -1.0 898,084 + LU632_RS04585 0.29 -0.7 898,119 - LU632_RS04585 0.39 -1.5 898,311 - +0.1
Or see this region's nucleotide sequence