Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04560 and LU632_RS04565 are separated by 73 nucleotides LU632_RS04565 and LU632_RS04570 overlap by 61 nucleotides LU632_RS04570 and LU632_RS04575 are separated by 147 nucleotides LU632_RS04575 and LU632_RS04580 are separated by 89 nucleotides LU632_RS04580 and LU632_RS04585 are separated by 2 nucleotides
LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066
_RS04560
LU632_RS04565: LU632_RS04565 - restriction endonuclease, at 895,140 to 895,556
_RS04565
LU632_RS04570: LU632_RS04570 - hypothetical protein, at 895,496 to 895,918
_RS04570
LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289
_RS04575
LU632_RS04580: LU632_RS04580 - hypothetical protein, at 897,379 to 897,981
_RS04580
LU632_RS04585: LU632_RS04585 - contact-dependent growth inhibition system immunity protein, at 897,984 to 898,331
_RS04585
Position (kb) 896
897
898 Strain fitness (log2 ratio) -1
0
1
2 at 895.088 kb on + strand at 895.089 kb on - strand at 895.123 kb on - strand at 895.141 kb on + strand at 895.180 kb on + strand at 895.182 kb on + strand, within LU632_RS04565 at 895.328 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.627 kb on + strand, within LU632_RS04570 at 895.627 kb on + strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 897.378 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.449 kb on + strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.586 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.759 kb on + strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 898.021 kb on + strand, within LU632_RS04585 at 898.022 kb on - strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.030 kb on - strand, within LU632_RS04585 at 898.045 kb on - strand, within LU632_RS04585 at 898.062 kb on - strand, within LU632_RS04585 at 898.084 kb on + strand, within LU632_RS04585 at 898.119 kb on - strand, within LU632_RS04585
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 895,088 + +1.4 895,089 - +0.0 895,123 - -0.7 895,141 + +0.4 895,180 + -1.3 895,182 + LU632_RS04565 0.10 -0.0 895,328 + LU632_RS04565 0.45 -0.1 895,450 + LU632_RS04565 0.74 -0.1 895,450 + LU632_RS04565 0.74 -1.1 895,450 + LU632_RS04565 0.74 -0.1 895,461 - LU632_RS04565 0.77 -0.5 895,461 - LU632_RS04565 0.77 -0.7 895,627 + LU632_RS04570 0.31 -0.5 895,627 + LU632_RS04570 0.31 -0.1 895,632 - LU632_RS04570 0.32 -0.8 895,632 - LU632_RS04570 0.32 -0.2 895,716 + LU632_RS04570 0.52 +0.7 895,716 + LU632_RS04570 0.52 -0.3 895,716 + LU632_RS04570 0.52 +0.9 897,378 + -0.1 897,436 + -0.3 897,436 + -0.5 897,436 + -1.5 897,436 + +0.9 897,436 + +0.0 897,437 - -0.3 897,437 - +0.4 897,437 - -0.4 897,437 - -0.6 897,449 + LU632_RS04580 0.12 -0.0 897,583 - LU632_RS04580 0.34 -0.4 897,583 - LU632_RS04580 0.34 +0.4 897,586 - LU632_RS04580 0.34 +0.9 897,747 - LU632_RS04580 0.61 -0.1 897,747 - LU632_RS04580 0.61 +0.2 897,747 - LU632_RS04580 0.61 -1.5 897,759 + LU632_RS04580 0.63 +1.9 897,762 - LU632_RS04580 0.64 +0.9 897,762 - LU632_RS04580 0.64 -0.6 897,762 - LU632_RS04580 0.64 +0.2 897,842 + LU632_RS04580 0.77 +0.3 897,842 + LU632_RS04580 0.77 -0.9 897,843 - LU632_RS04580 0.77 -1.0 897,843 - LU632_RS04580 0.77 +1.0 898,021 + LU632_RS04585 0.11 +0.0 898,022 - LU632_RS04585 0.11 +0.9 898,025 + LU632_RS04585 0.12 +0.2 898,025 + LU632_RS04585 0.12 -0.6 898,025 + LU632_RS04585 0.12 +0.6 898,025 + LU632_RS04585 0.12 +0.1 898,025 + LU632_RS04585 0.12 -1.5 898,026 - LU632_RS04585 0.12 -0.0 898,026 - LU632_RS04585 0.12 +1.2 898,029 + LU632_RS04585 0.13 +0.1 898,029 + LU632_RS04585 0.13 -1.0 898,030 - LU632_RS04585 0.13 +0.3 898,045 - LU632_RS04585 0.18 +0.5 898,062 - LU632_RS04585 0.22 -1.0 898,084 + LU632_RS04585 0.29 -0.7 898,119 - LU632_RS04585 0.39 -1.5
Or see this region's nucleotide sequence