Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04475 and LU632_RS04480 are separated by 113 nucleotides LU632_RS04480 and LU632_RS04485 are separated by 101 nucleotides LU632_RS04485 and LU632_RS04490 overlap by 4 nucleotides LU632_RS04490 and LU632_RS04495 overlap by 41 nucleotides LU632_RS04495 and LU632_RS04500 are separated by 238 nucleotides
LU632_RS04475: LU632_RS04475 - hypothetical protein, at 881,988 to 882,233
_RS04475
LU632_RS04480: LU632_RS04480 - helix-turn-helix transcriptional regulator, at 882,347 to 882,751
_RS04480
LU632_RS04485: LU632_RS04485 - SDR family oxidoreductase, at 882,853 to 883,704
_RS04485
LU632_RS04490: LU632_RS04490 - hypothetical protein, at 883,701 to 884,051
_RS04490
LU632_RS04495: LU632_RS04495 - hypothetical protein, at 884,011 to 884,283
_RS04495
LU632_RS04500: LU632_RS04500 - hypothetical protein, at 884,522 to 884,725
_RS04500
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1
2 at 881.981 kb on + strand at 882.035 kb on + strand, within LU632_RS04475 at 882.285 kb on - strand at 882.497 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.638 kb on + strand, within LU632_RS04480 at 882.639 kb on - strand, within LU632_RS04480 at 882.799 kb on - strand at 882.800 kb on + strand at 882.938 kb on + strand at 883.052 kb on + strand, within LU632_RS04485 at 883.056 kb on - strand, within LU632_RS04485 at 883.421 kb on - strand, within LU632_RS04485 at 883.829 kb on + strand, within LU632_RS04490 at 883.830 kb on - strand, within LU632_RS04490 at 883.833 kb on - strand, within LU632_RS04490 at 883.916 kb on - strand, within LU632_RS04490 at 883.918 kb on + strand, within LU632_RS04490 at 883.919 kb on - strand, within LU632_RS04490 at 884.088 kb on + strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.114 kb on - strand, within LU632_RS04495 at 884.122 kb on - strand, within LU632_RS04495 at 884.598 kb on + strand, within LU632_RS04500 at 884.598 kb on + strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.699 kb on - strand, within LU632_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 881,981 + +0.1 882,035 + LU632_RS04475 0.19 +2.4 882,285 - +0.5 882,497 + LU632_RS04480 0.37 +0.2 882,634 + LU632_RS04480 0.71 +0.2 882,634 + LU632_RS04480 0.71 +0.5 882,638 + LU632_RS04480 0.72 -1.0 882,639 - LU632_RS04480 0.72 -0.3 882,799 - +0.5 882,800 + +1.9 882,938 + +0.2 883,052 + LU632_RS04485 0.23 -1.1 883,056 - LU632_RS04485 0.24 +0.3 883,421 - LU632_RS04485 0.67 -0.8 883,829 + LU632_RS04490 0.36 +0.4 883,830 - LU632_RS04490 0.37 -0.4 883,833 - LU632_RS04490 0.38 -0.4 883,916 - LU632_RS04490 0.61 +1.9 883,918 + LU632_RS04490 0.62 +0.2 883,919 - LU632_RS04490 0.62 -0.6 884,088 + LU632_RS04495 0.28 -0.2 884,089 - LU632_RS04495 0.29 +0.3 884,089 - LU632_RS04495 0.29 -0.3 884,114 - LU632_RS04495 0.38 -0.4 884,122 - LU632_RS04495 0.41 -2.2 884,598 + LU632_RS04500 0.37 +0.5 884,598 + LU632_RS04500 0.37 -0.6 884,599 - LU632_RS04500 0.38 +0.0 884,599 - LU632_RS04500 0.38 -0.7 884,599 - LU632_RS04500 0.38 +0.0 884,599 - LU632_RS04500 0.38 +1.3 884,599 - LU632_RS04500 0.38 -0.1 884,699 - LU632_RS04500 0.87 -0.0
Or see this region's nucleotide sequence