Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03950

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03940 and LU632_RS03945 are separated by 49 nucleotidesLU632_RS03945 and LU632_RS03950 are separated by 97 nucleotidesLU632_RS03950 and LU632_RS03955 are separated by 502 nucleotidesLU632_RS03955 and LU632_RS03960 overlap by 4 nucleotides LU632_RS03940: LU632_RS03940 - CHC2 zinc finger domain-containing protein, at 790,953 to 793,877 _RS03940 LU632_RS03945: LU632_RS03945 - tyrosine-type recombinase/integrase, at 793,927 to 794,705 _RS03945 LU632_RS03950: LU632_RS03950 - hypothetical protein, at 794,803 to 795,048 _RS03950 LU632_RS03955: LU632_RS03955 - HNH/ENDO VII family nuclease, at 795,551 to 795,832 _RS03955 LU632_RS03960: LU632_RS03960 - SMI1/KNR4 family protein, at 795,829 to 796,260 _RS03960 Position (kb) 794 795 796Strain fitness (log2 ratio) -1 0 1at 794.888 kb on + strand, within LU632_RS03950at 794.890 kb on + strand, within LU632_RS03950at 794.890 kb on + strand, within LU632_RS03950at 794.890 kb on + strand, within LU632_RS03950at 795.036 kb on + strandat 795.036 kb on + strandat 795.037 kb on - strandat 795.160 kb on + strandat 795.160 kb on + strandat 795.196 kb on + strandat 795.278 kb on - strandat 795.337 kb on + strandat 795.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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794,888 + LU632_RS03950 0.35 -1.2
794,890 + LU632_RS03950 0.35 -0.8
794,890 + LU632_RS03950 0.35 -0.6
794,890 + LU632_RS03950 0.35 -0.3
795,036 + +0.6
795,036 + +0.3
795,037 - +0.2
795,160 + -1.3
795,160 + +0.5
795,196 + -0.1
795,278 - -0.1
795,337 + +0.5
795,392 - +0.3

Or see this region's nucleotide sequence