Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS03905 overlap by 4 nucleotides LU632_RS03905 and LU632_RS03910 are separated by 3 nucleotides LU632_RS03910 and LU632_RS03915 are separated by 161 nucleotides LU632_RS03915 and LU632_RS03920 overlap by 4 nucleotides
LU632_RS03900: vgrG - type VI secretion system tip protein VgrG, at 781,439 to 783,370
vgrG
LU632_RS03905: LU632_RS03905 - DUF1795 domain-containing protein, at 783,367 to 783,798
_RS03905
LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896
_RS03910
LU632_RS03915: LU632_RS03915 - HNH/ENDO VII family nuclease, at 788,058 to 788,339
_RS03915
LU632_RS03920: LU632_RS03920 - SMI1/KNR4 family protein, at 788,336 to 788,767
_RS03920
Position (kb) 783
784
785
786
787
788 Strain fitness (log2 ratio) -2
-1
0
1 at 782.954 kb on - strand, within vgrG at 783.093 kb on - strand, within vgrG at 783.271 kb on + strand at 783.347 kb on - strand at 783.520 kb on + strand, within LU632_RS03905 at 783.521 kb on - strand, within LU632_RS03905 at 783.895 kb on + strand at 783.908 kb on + strand at 783.966 kb on - strand at 784.105 kb on - strand at 784.105 kb on - strand at 784.324 kb on + strand, within LU632_RS03910 at 784.337 kb on + strand, within LU632_RS03910 at 784.338 kb on - strand, within LU632_RS03910 at 784.401 kb on + strand, within LU632_RS03910 at 784.404 kb on + strand, within LU632_RS03910 at 784.405 kb on - strand, within LU632_RS03910 at 784.892 kb on - strand, within LU632_RS03910 at 785.086 kb on + strand, within LU632_RS03910 at 785.112 kb on + strand, within LU632_RS03910 at 785.252 kb on + strand, within LU632_RS03910 at 785.290 kb on + strand, within LU632_RS03910 at 785.321 kb on + strand, within LU632_RS03910 at 785.368 kb on + strand, within LU632_RS03910 at 785.368 kb on + strand, within LU632_RS03910 at 785.369 kb on - strand, within LU632_RS03910 at 785.494 kb on + strand, within LU632_RS03910 at 785.622 kb on - strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.695 kb on + strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.696 kb on - strand, within LU632_RS03910 at 785.786 kb on - strand, within LU632_RS03910 at 785.909 kb on - strand, within LU632_RS03910 at 785.915 kb on - strand, within LU632_RS03910 at 785.915 kb on - strand, within LU632_RS03910 at 785.915 kb on - strand, within LU632_RS03910 at 786.229 kb on + strand, within LU632_RS03910 at 786.229 kb on + strand, within LU632_RS03910 at 786.230 kb on - strand, within LU632_RS03910 at 786.349 kb on + strand, within LU632_RS03910 at 786.350 kb on - strand, within LU632_RS03910 at 786.350 kb on - strand, within LU632_RS03910 at 786.350 kb on - strand, within LU632_RS03910 at 786.372 kb on + strand, within LU632_RS03910 at 786.372 kb on + strand, within LU632_RS03910 at 786.373 kb on - strand, within LU632_RS03910 at 786.385 kb on - strand, within LU632_RS03910 at 786.562 kb on + strand, within LU632_RS03910 at 786.568 kb on + strand, within LU632_RS03910 at 786.569 kb on - strand, within LU632_RS03910 at 786.622 kb on + strand, within LU632_RS03910 at 786.622 kb on + strand, within LU632_RS03910 at 786.729 kb on + strand, within LU632_RS03910 at 786.730 kb on - strand, within LU632_RS03910 at 786.730 kb on - strand, within LU632_RS03910 at 786.730 kb on - strand, within LU632_RS03910 at 786.861 kb on + strand, within LU632_RS03910 at 786.862 kb on - strand, within LU632_RS03910 at 787.348 kb on + strand, within LU632_RS03910 at 787.348 kb on + strand, within LU632_RS03910 at 787.414 kb on + strand, within LU632_RS03910 at 787.447 kb on - strand, within LU632_RS03910 at 787.447 kb on - strand, within LU632_RS03910 at 787.556 kb on - strand at 787.630 kb on + strand at 787.819 kb on + strand at 787.819 kb on + strand at 787.821 kb on + strand at 787.821 kb on + strand at 787.822 kb on - strand at 787.837 kb on + strand at 787.838 kb on - strand at 787.859 kb on - strand at 787.903 kb on - strand at 787.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 782,954 - vgrG LU632_RS03900 0.78 +0.5 783,093 - vgrG LU632_RS03900 0.86 -0.6 783,271 + +0.6 783,347 - -1.1 783,520 + LU632_RS03905 0.35 +0.1 783,521 - LU632_RS03905 0.36 -0.5 783,895 + -0.1 783,908 + +0.6 783,966 - -0.7 784,105 - +0.1 784,105 - -0.3 784,324 + LU632_RS03910 0.13 -0.3 784,337 + LU632_RS03910 0.13 -0.7 784,338 - LU632_RS03910 0.13 -0.0 784,401 + LU632_RS03910 0.15 +0.1 784,404 + LU632_RS03910 0.15 +1.6 784,405 - LU632_RS03910 0.15 +0.1 784,892 - LU632_RS03910 0.27 -0.7 785,086 + LU632_RS03910 0.31 +1.3 785,112 + LU632_RS03910 0.32 +0.5 785,252 + LU632_RS03910 0.35 +0.0 785,290 + LU632_RS03910 0.36 -0.3 785,321 + LU632_RS03910 0.37 +0.3 785,368 + LU632_RS03910 0.38 -0.6 785,368 + LU632_RS03910 0.38 -0.5 785,369 - LU632_RS03910 0.38 +0.9 785,494 + LU632_RS03910 0.41 +0.1 785,622 - LU632_RS03910 0.44 -0.3 785,695 + LU632_RS03910 0.46 -0.2 785,695 + LU632_RS03910 0.46 +0.4 785,695 + LU632_RS03910 0.46 -0.2 785,695 + LU632_RS03910 0.46 +0.1 785,695 + LU632_RS03910 0.46 -0.7 785,695 + LU632_RS03910 0.46 +0.5 785,695 + LU632_RS03910 0.46 -0.2 785,696 - LU632_RS03910 0.46 -0.4 785,696 - LU632_RS03910 0.46 +1.5 785,696 - LU632_RS03910 0.46 -0.6 785,696 - LU632_RS03910 0.46 +0.2 785,696 - LU632_RS03910 0.46 +0.3 785,696 - LU632_RS03910 0.46 -0.2 785,696 - LU632_RS03910 0.46 -0.4 785,696 - LU632_RS03910 0.46 -0.2 785,696 - LU632_RS03910 0.46 +0.5 785,696 - LU632_RS03910 0.46 -0.1 785,696 - LU632_RS03910 0.46 -0.5 785,696 - LU632_RS03910 0.46 -0.5 785,696 - LU632_RS03910 0.46 -0.1 785,696 - LU632_RS03910 0.46 -1.5 785,696 - LU632_RS03910 0.46 +0.2 785,696 - LU632_RS03910 0.46 +0.5 785,786 - LU632_RS03910 0.48 -1.1 785,909 - LU632_RS03910 0.51 -0.6 785,915 - LU632_RS03910 0.52 +0.8 785,915 - LU632_RS03910 0.52 +0.2 785,915 - LU632_RS03910 0.52 +0.3 786,229 + LU632_RS03910 0.59 -0.5 786,229 + LU632_RS03910 0.59 -0.2 786,230 - LU632_RS03910 0.59 -1.1 786,349 + LU632_RS03910 0.62 -0.7 786,350 - LU632_RS03910 0.62 +0.5 786,350 - LU632_RS03910 0.62 -1.4 786,350 - LU632_RS03910 0.62 -0.1 786,372 + LU632_RS03910 0.63 -1.2 786,372 + LU632_RS03910 0.63 +0.3 786,373 - LU632_RS03910 0.63 -0.5 786,385 - LU632_RS03910 0.63 -1.0 786,562 + LU632_RS03910 0.67 -0.1 786,568 + LU632_RS03910 0.68 -0.1 786,569 - LU632_RS03910 0.68 -0.5 786,622 + LU632_RS03910 0.69 -1.5 786,622 + LU632_RS03910 0.69 -0.8 786,729 + LU632_RS03910 0.71 -0.5 786,730 - LU632_RS03910 0.72 +0.3 786,730 - LU632_RS03910 0.72 -0.5 786,730 - LU632_RS03910 0.72 +0.1 786,861 + LU632_RS03910 0.75 -0.1 786,862 - LU632_RS03910 0.75 +0.4 787,348 + LU632_RS03910 0.87 +0.1 787,348 + LU632_RS03910 0.87 +0.3 787,414 + LU632_RS03910 0.88 -0.4 787,447 - LU632_RS03910 0.89 -0.4 787,447 - LU632_RS03910 0.89 -0.3 787,556 - -2.0 787,630 + -0.1 787,819 + +1.4 787,819 + -0.9 787,821 + -0.9 787,821 + +0.2 787,822 - +1.1 787,837 + -0.1 787,838 - -0.4 787,859 - -0.5 787,903 - +0.5 787,903 - -1.5
Or see this region's nucleotide sequence