Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03570 and LU632_RS03575 are separated by 4 nucleotides LU632_RS03575 and LU632_RS03580 are separated by 93 nucleotides LU632_RS03580 and LU632_RS03585 overlap by 1 nucleotides LU632_RS03585 and LU632_RS03590 overlap by 10 nucleotides
LU632_RS03570: LU632_RS03570 - phage major capsid protein, P2 family, at 722,707 to 723,774
_RS03570
LU632_RS03575: LU632_RS03575 - terminase endonuclease subunit, at 723,779 to 724,528
_RS03575
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
LU632_RS03585: LU632_RS03585 - tail protein X, at 725,131 to 725,334
_RS03585
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
Position (kb) 723
724
725 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.007 kb on + strand, within LU632_RS03570 at 723.008 kb on - strand, within LU632_RS03570 at 723.025 kb on - strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.048 kb on + strand, within LU632_RS03570 at 723.230 kb on - strand, within LU632_RS03570 at 723.382 kb on + strand, within LU632_RS03570 at 723.421 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570 at 723.662 kb on - strand, within LU632_RS03570 at 723.682 kb on + strand at 723.698 kb on - strand at 723.972 kb on - strand, within LU632_RS03575 at 724.106 kb on + strand, within LU632_RS03575 at 724.142 kb on + strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.447 kb on + strand, within LU632_RS03575 at 724.526 kb on + strand at 724.609 kb on + strand at 724.610 kb on - strand at 724.633 kb on - strand at 724.707 kb on + strand, within LU632_RS03580 at 724.707 kb on + strand, within LU632_RS03580 at 724.708 kb on + strand, within LU632_RS03580 at 724.712 kb on - strand, within LU632_RS03580 at 724.717 kb on + strand, within LU632_RS03580 at 724.944 kb on - strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.983 kb on - strand, within LU632_RS03580 at 725.325 kb on - strand at 725.336 kb on + strand at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 723,007 + LU632_RS03570 0.28 +0.2 723,008 - LU632_RS03570 0.28 -0.1 723,025 - LU632_RS03570 0.30 -0.5 723,041 + LU632_RS03570 0.31 -0.4 723,041 + LU632_RS03570 0.31 -0.7 723,046 + LU632_RS03570 0.32 -2.3 723,046 + LU632_RS03570 0.32 -0.3 723,046 + LU632_RS03570 0.32 -0.1 723,047 - LU632_RS03570 0.32 -0.1 723,047 - LU632_RS03570 0.32 -0.4 723,047 - LU632_RS03570 0.32 -0.6 723,048 + LU632_RS03570 0.32 +0.5 723,230 - LU632_RS03570 0.49 -0.2 723,382 + LU632_RS03570 0.63 +1.1 723,421 - LU632_RS03570 0.67 +0.9 723,440 - LU632_RS03570 0.69 -0.4 723,440 - LU632_RS03570 0.69 -0.5 723,440 - LU632_RS03570 0.69 +0.4 723,545 - LU632_RS03570 0.78 +0.5 723,545 - LU632_RS03570 0.78 -0.7 723,592 - LU632_RS03570 0.83 -0.7 723,592 - LU632_RS03570 0.83 +0.2 723,662 - LU632_RS03570 0.89 -0.1 723,682 + -0.7 723,698 - -0.8 723,972 - LU632_RS03575 0.26 -0.2 724,106 + LU632_RS03575 0.44 +0.4 724,142 + LU632_RS03575 0.48 +2.4 724,143 - LU632_RS03575 0.49 +0.2 724,143 - LU632_RS03575 0.49 +1.1 724,143 - LU632_RS03575 0.49 +0.7 724,447 + LU632_RS03575 0.89 +0.6 724,526 + -0.1 724,609 + -0.8 724,610 - -0.1 724,633 - +0.4 724,707 + LU632_RS03580 0.17 -0.1 724,707 + LU632_RS03580 0.17 -0.4 724,708 + LU632_RS03580 0.17 -0.2 724,712 - LU632_RS03580 0.18 -0.3 724,717 + LU632_RS03580 0.19 +0.2 724,944 - LU632_RS03580 0.63 -1.1 724,982 + LU632_RS03580 0.71 +0.0 724,982 + LU632_RS03580 0.71 -0.4 724,983 - LU632_RS03580 0.71 -1.7 725,325 - -0.6 725,336 + -0.1 725,424 + LU632_RS03590 0.45 -0.6 725,425 - LU632_RS03590 0.45 +0.1 725,425 - LU632_RS03590 0.45 +0.9
Or see this region's nucleotide sequence