Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03560 and LU632_RS03565 are separated by 165 nucleotides LU632_RS03565 and LU632_RS03570 are separated by 75 nucleotides
LU632_RS03560: LU632_RS03560 - terminase ATPase subunit family protein, at 719,842 to 721,611
_RS03560
LU632_RS03565: LU632_RS03565 - GPO family capsid scaffolding protein, at 721,777 to 722,631
_RS03565
LU632_RS03570: LU632_RS03570 - phage major capsid protein, P2 family, at 722,707 to 723,774
_RS03570
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 720.847 kb on + strand, within LU632_RS03560 at 720.860 kb on + strand, within LU632_RS03560 at 720.860 kb on + strand, within LU632_RS03560 at 720.861 kb on - strand, within LU632_RS03560 at 720.993 kb on - strand, within LU632_RS03560 at 721.008 kb on - strand, within LU632_RS03560 at 721.021 kb on - strand, within LU632_RS03560 at 721.088 kb on + strand, within LU632_RS03560 at 721.132 kb on - strand, within LU632_RS03560 at 721.248 kb on + strand, within LU632_RS03560 at 721.594 kb on - strand at 721.649 kb on + strand at 721.649 kb on + strand at 721.843 kb on - strand at 721.879 kb on + strand, within LU632_RS03565 at 721.880 kb on - strand, within LU632_RS03565 at 722.137 kb on + strand, within LU632_RS03565 at 722.138 kb on - strand, within LU632_RS03565 at 722.188 kb on + strand, within LU632_RS03565 at 722.703 kb on + strand at 722.703 kb on + strand at 722.704 kb on - strand at 722.704 kb on - strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.707 kb on - strand at 722.707 kb on - strand at 722.707 kb on - strand at 722.733 kb on + strand at 722.741 kb on - strand at 723.007 kb on + strand, within LU632_RS03570 at 723.008 kb on - strand, within LU632_RS03570 at 723.025 kb on - strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.048 kb on + strand, within LU632_RS03570 at 723.230 kb on - strand, within LU632_RS03570 at 723.382 kb on + strand, within LU632_RS03570 at 723.421 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 720,847 + LU632_RS03560 0.57 +0.1 720,860 + LU632_RS03560 0.58 -0.7 720,860 + LU632_RS03560 0.58 -0.1 720,861 - LU632_RS03560 0.58 -0.4 720,993 - LU632_RS03560 0.65 +0.1 721,008 - LU632_RS03560 0.66 -1.1 721,021 - LU632_RS03560 0.67 +1.2 721,088 + LU632_RS03560 0.70 -1.1 721,132 - LU632_RS03560 0.73 -0.2 721,248 + LU632_RS03560 0.79 +0.3 721,594 - +0.4 721,649 + +0.2 721,649 + -0.9 721,843 - +0.1 721,879 + LU632_RS03565 0.12 +2.4 721,880 - LU632_RS03565 0.12 +0.1 722,137 + LU632_RS03565 0.42 +0.2 722,138 - LU632_RS03565 0.42 +0.1 722,188 + LU632_RS03565 0.48 -0.3 722,703 + +0.1 722,703 + +0.1 722,704 - +0.9 722,704 - -0.5 722,706 + -0.6 722,706 + -0.4 722,706 + +0.0 722,706 + -0.0 722,707 - +0.9 722,707 - +0.0 722,707 - -0.2 722,733 + -0.6 722,741 - +1.1 723,007 + LU632_RS03570 0.28 +0.2 723,008 - LU632_RS03570 0.28 -0.1 723,025 - LU632_RS03570 0.30 -0.5 723,041 + LU632_RS03570 0.31 -0.4 723,041 + LU632_RS03570 0.31 -0.7 723,046 + LU632_RS03570 0.32 -2.3 723,046 + LU632_RS03570 0.32 -0.3 723,046 + LU632_RS03570 0.32 -0.1 723,047 - LU632_RS03570 0.32 -0.1 723,047 - LU632_RS03570 0.32 -0.4 723,047 - LU632_RS03570 0.32 -0.6 723,048 + LU632_RS03570 0.32 +0.5 723,230 - LU632_RS03570 0.49 -0.2 723,382 + LU632_RS03570 0.63 +1.1 723,421 - LU632_RS03570 0.67 +0.9 723,440 - LU632_RS03570 0.69 -0.4 723,440 - LU632_RS03570 0.69 -0.5 723,440 - LU632_RS03570 0.69 +0.4 723,545 - LU632_RS03570 0.78 +0.5 723,545 - LU632_RS03570 0.78 -0.7 723,592 - LU632_RS03570 0.83 -0.7 723,592 - LU632_RS03570 0.83 +0.2
Or see this region's nucleotide sequence