Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiB and sgrR are separated by 174 nucleotides sgrR and LU632_RS02845 are separated by 261 nucleotides
LU632_RS02835: thiB - thiamine ABC transporter substrate binding subunit, at 576,918 to 577,904
thiB
LU632_RS02840: sgrR - HTH-type transcriptional regulator SgrR, at 578,079 to 579,740
sgrR
LU632_RS02845: LU632_RS02845 - MFS transporter, at 580,002 to 581,180
_RS02845
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 577.176 kb on + strand, within thiB at 577.177 kb on - strand, within thiB at 577.177 kb on - strand, within thiB at 577.201 kb on - strand, within thiB at 577.241 kb on - strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.257 kb on - strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.259 kb on - strand, within thiB at 577.300 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.517 kb on - strand, within thiB at 577.537 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.822 kb on + strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.829 kb on - strand at 578.047 kb on - strand at 578.051 kb on + strand at 578.052 kb on - strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.157 kb on - strand at 578.157 kb on - strand at 578.160 kb on + strand at 578.161 kb on - strand at 578.161 kb on - strand at 578.175 kb on + strand at 578.176 kb on - strand at 578.225 kb on + strand at 578.416 kb on + strand, within sgrR at 578.693 kb on + strand, within sgrR at 578.693 kb on + strand, within sgrR at 578.731 kb on + strand, within sgrR at 578.732 kb on - strand, within sgrR at 578.804 kb on - strand, within sgrR at 578.876 kb on - strand, within sgrR at 578.967 kb on + strand, within sgrR at 579.049 kb on + strand, within sgrR at 579.049 kb on + strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.087 kb on - strand, within sgrR at 579.101 kb on - strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.365 kb on - strand, within sgrR at 579.624 kb on - strand at 579.785 kb on + strand at 579.785 kb on + strand at 579.786 kb on - strand at 579.786 kb on - strand at 579.849 kb on + strand at 579.897 kb on + strand at 579.958 kb on + strand at 579.967 kb on + strand at 579.967 kb on + strand at 580.056 kb on - strand at 580.071 kb on - strand at 580.167 kb on - strand, within LU632_RS02845 at 580.361 kb on + strand, within LU632_RS02845 at 580.362 kb on - strand, within LU632_RS02845 at 580.436 kb on + strand, within LU632_RS02845 at 580.437 kb on - strand, within LU632_RS02845 at 580.504 kb on - strand, within LU632_RS02845 at 580.661 kb on - strand, within LU632_RS02845 at 580.692 kb on - strand, within LU632_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 577,176 + thiB LU632_RS02835 0.26 +0.1 577,177 - thiB LU632_RS02835 0.26 -0.4 577,177 - thiB LU632_RS02835 0.26 +0.1 577,201 - thiB LU632_RS02835 0.29 -0.1 577,241 - thiB LU632_RS02835 0.33 +2.6 577,256 + thiB LU632_RS02835 0.34 +0.3 577,256 + thiB LU632_RS02835 0.34 -0.7 577,256 + thiB LU632_RS02835 0.34 +0.5 577,257 - thiB LU632_RS02835 0.34 +0.6 577,258 + thiB LU632_RS02835 0.34 -0.1 577,258 + thiB LU632_RS02835 0.34 +1.4 577,258 + thiB LU632_RS02835 0.34 -0.1 577,258 + thiB LU632_RS02835 0.34 +0.3 577,259 - thiB LU632_RS02835 0.35 -0.5 577,300 + thiB LU632_RS02835 0.39 +1.2 577,511 + thiB LU632_RS02835 0.60 +0.2 577,511 + thiB LU632_RS02835 0.60 -0.3 577,511 + thiB LU632_RS02835 0.60 +0.0 577,516 + thiB LU632_RS02835 0.61 +1.4 577,516 + thiB LU632_RS02835 0.61 -0.1 577,516 + thiB LU632_RS02835 0.61 +0.3 577,517 - thiB LU632_RS02835 0.61 -0.9 577,537 + thiB LU632_RS02835 0.63 +0.4 577,741 + thiB LU632_RS02835 0.83 +0.2 577,741 + thiB LU632_RS02835 0.83 +0.9 577,822 + +0.6 577,823 - -0.5 577,823 - +2.9 577,823 - -0.1 577,823 - -0.6 577,823 - -0.2 577,829 - +0.1 578,047 - -0.3 578,051 + -0.2 578,052 - -1.5 578,156 + +0.3 578,156 + +0.6 578,156 + +0.7 578,156 + -0.7 578,157 - +0.7 578,157 - +0.1 578,160 + +0.9 578,161 - -0.5 578,161 - -1.1 578,175 + -0.1 578,176 - -0.0 578,225 + +0.3 578,416 + sgrR LU632_RS02840 0.20 +0.1 578,693 + sgrR LU632_RS02840 0.37 -0.1 578,693 + sgrR LU632_RS02840 0.37 -0.0 578,731 + sgrR LU632_RS02840 0.39 +0.4 578,732 - sgrR LU632_RS02840 0.39 -1.9 578,804 - sgrR LU632_RS02840 0.44 -0.3 578,876 - sgrR LU632_RS02840 0.48 -0.4 578,967 + sgrR LU632_RS02840 0.53 +0.4 579,049 + sgrR LU632_RS02840 0.58 +1.8 579,049 + sgrR LU632_RS02840 0.58 -0.3 579,050 - sgrR LU632_RS02840 0.58 -0.5 579,050 - sgrR LU632_RS02840 0.58 +1.2 579,054 - sgrR LU632_RS02840 0.59 -0.2 579,054 - sgrR LU632_RS02840 0.59 -0.1 579,087 - sgrR LU632_RS02840 0.61 +0.5 579,101 - sgrR LU632_RS02840 0.61 -2.3 579,269 + sgrR LU632_RS02840 0.72 +0.2 579,269 + sgrR LU632_RS02840 0.72 -0.1 579,365 - sgrR LU632_RS02840 0.77 -0.2 579,624 - -0.3 579,785 + +0.4 579,785 + -0.5 579,786 - -0.5 579,786 - +0.0 579,849 + -0.1 579,897 + -1.0 579,958 + -0.2 579,967 + -0.9 579,967 + -0.8 580,056 - +0.1 580,071 - -0.5 580,167 - LU632_RS02845 0.14 +0.7 580,361 + LU632_RS02845 0.30 -1.5 580,362 - LU632_RS02845 0.31 -0.0 580,436 + LU632_RS02845 0.37 +0.4 580,437 - LU632_RS02845 0.37 -0.6 580,504 - LU632_RS02845 0.43 +0.3 580,661 - LU632_RS02845 0.56 +0.2 580,692 - LU632_RS02845 0.59 +0.1
Or see this region's nucleotide sequence