Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serB and radA are separated by 14 nucleotides radA and nadR are separated by 105 nucleotides
LU632_RS02545: serB - phosphoserine phosphatase, at 505,280 to 506,257
serB
LU632_RS02550: radA - DNA repair protein RadA, at 506,272 to 507,654
radA
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.278 kb on + strand at 505.279 kb on - strand at 505.286 kb on - strand at 505.289 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.661 kb on - strand, within serB at 505.661 kb on - strand, within serB at 505.903 kb on + strand, within serB at 505.907 kb on + strand, within serB at 505.919 kb on + strand, within serB at 506.009 kb on - strand, within serB at 506.026 kb on + strand, within serB at 506.026 kb on + strand, within serB at 506.027 kb on - strand, within serB at 506.269 kb on - strand at 506.299 kb on + strand at 506.300 kb on + strand at 506.301 kb on - strand at 506.301 kb on - strand at 506.304 kb on + strand at 506.599 kb on - strand, within radA at 506.609 kb on + strand, within radA at 506.650 kb on + strand, within radA at 506.650 kb on + strand, within radA at 506.651 kb on - strand, within radA at 506.727 kb on + strand, within radA at 506.728 kb on - strand, within radA at 506.784 kb on + strand, within radA at 506.878 kb on + strand, within radA at 506.879 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 507.037 kb on - strand, within radA at 507.037 kb on - strand, within radA at 507.043 kb on - strand, within radA at 507.604 kb on + strand at 507.667 kb on + strand at 507.720 kb on + strand at 507.720 kb on + strand at 507.721 kb on - strand at 507.735 kb on - strand at 507.776 kb on - strand at 507.851 kb on - strand at 507.879 kb on + strand at 508.000 kb on + strand, within nadR at 508.000 kb on - strand, within nadR at 508.003 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.044 kb on + strand, within nadR at 508.152 kb on + strand, within nadR at 508.174 kb on - strand, within nadR at 508.286 kb on - strand, within nadR at 508.287 kb on + strand, within nadR at 508.384 kb on - strand, within nadR at 508.420 kb on + strand, within nadR at 508.506 kb on - strand, within nadR at 508.507 kb on - strand, within nadR at 508.524 kb on + strand, within nadR at 508.525 kb on - strand, within nadR at 508.527 kb on + strand, within nadR at 508.547 kb on + strand, within nadR at 508.559 kb on - strand, within nadR at 508.601 kb on - strand, within nadR
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 505,278 + -2.0 505,279 - -1.9 505,286 - -0.1 505,289 - -0.3 505,319 - -0.1 505,319 - -0.1 505,660 + serB LU632_RS02545 0.39 -0.7 505,660 + serB LU632_RS02545 0.39 -0.7 505,660 + serB LU632_RS02545 0.39 +1.9 505,660 + serB LU632_RS02545 0.39 -0.1 505,661 - serB LU632_RS02545 0.39 -2.1 505,661 - serB LU632_RS02545 0.39 -0.7 505,903 + serB LU632_RS02545 0.64 +0.9 505,907 + serB LU632_RS02545 0.64 -0.7 505,919 + serB LU632_RS02545 0.65 -0.1 506,009 - serB LU632_RS02545 0.75 -0.1 506,026 + serB LU632_RS02545 0.76 -0.6 506,026 + serB LU632_RS02545 0.76 -0.9 506,027 - serB LU632_RS02545 0.76 +0.9 506,269 - -1.1 506,299 + -0.3 506,300 + -0.6 506,301 - +1.9 506,301 - -0.4 506,304 + +0.3 506,599 - radA LU632_RS02550 0.24 +0.4 506,609 + radA LU632_RS02550 0.24 +0.6 506,650 + radA LU632_RS02550 0.27 -0.0 506,650 + radA LU632_RS02550 0.27 -1.4 506,651 - radA LU632_RS02550 0.27 -0.8 506,727 + radA LU632_RS02550 0.33 +1.0 506,728 - radA LU632_RS02550 0.33 +0.8 506,784 + radA LU632_RS02550 0.37 -2.6 506,878 + radA LU632_RS02550 0.44 -0.4 506,879 - radA LU632_RS02550 0.44 +0.3 506,934 - radA LU632_RS02550 0.48 -0.1 506,934 - radA LU632_RS02550 0.48 +0.3 506,934 - radA LU632_RS02550 0.48 -0.1 506,979 + radA LU632_RS02550 0.51 -0.4 506,979 + radA LU632_RS02550 0.51 +0.1 506,979 + radA LU632_RS02550 0.51 +0.5 507,037 - radA LU632_RS02550 0.55 -0.9 507,037 - radA LU632_RS02550 0.55 +0.0 507,043 - radA LU632_RS02550 0.56 +0.6 507,604 + -2.1 507,667 + +1.1 507,720 + -0.1 507,720 + -0.0 507,721 - -0.4 507,735 - -0.1 507,776 - -0.4 507,851 - -1.0 507,879 + +0.0 508,000 + nadR LU632_RS02555 0.20 -0.7 508,000 - nadR LU632_RS02555 0.20 +0.2 508,003 + nadR LU632_RS02555 0.20 -0.9 508,023 + nadR LU632_RS02555 0.21 -1.9 508,023 + nadR LU632_RS02555 0.21 -0.5 508,044 + nadR LU632_RS02555 0.23 -0.7 508,152 + nadR LU632_RS02555 0.32 -0.1 508,174 - nadR LU632_RS02555 0.34 -0.3 508,286 - nadR LU632_RS02555 0.43 +0.0 508,287 + nadR LU632_RS02555 0.43 +0.9 508,384 - nadR LU632_RS02555 0.51 -1.0 508,420 + nadR LU632_RS02555 0.54 +0.5 508,506 - nadR LU632_RS02555 0.61 -0.4 508,507 - nadR LU632_RS02555 0.61 -0.4 508,524 + nadR LU632_RS02555 0.62 -0.4 508,525 - nadR LU632_RS02555 0.62 -0.9 508,527 + nadR LU632_RS02555 0.63 -1.1 508,547 + nadR LU632_RS02555 0.64 -0.1 508,559 - nadR LU632_RS02555 0.65 -1.2 508,601 - nadR LU632_RS02555 0.69 -0.8
Or see this region's nucleotide sequence