Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01965 and LU632_RS01970 are separated by 127 nucleotides LU632_RS01970 and LU632_RS01975 overlap by 35 nucleotides LU632_RS01975 and LU632_RS01980 are separated by 82 nucleotides
LU632_RS01965: LU632_RS01965 - type 1 fimbrial protein, at 376,636 to 377,217
_RS01965
LU632_RS01970: LU632_RS01970 - molecular chaperone, at 377,345 to 378,064
_RS01970
LU632_RS01975: LU632_RS01975 - fimbrial biogenesis outer membrane usher protein, at 378,030 to 380,648
_RS01975
LU632_RS01980: LU632_RS01980 - fimbrial protein, at 380,731 to 381,633
_RS01980
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.079 kb on - strand, within LU632_RS01965 at 377.143 kb on + strand, within LU632_RS01965 at 377.144 kb on - strand, within LU632_RS01965 at 377.374 kb on + strand at 378.176 kb on + strand at 378.308 kb on - strand, within LU632_RS01975 at 378.371 kb on + strand, within LU632_RS01975 at 378.725 kb on + strand, within LU632_RS01975 at 378.726 kb on - strand, within LU632_RS01975 at 378.729 kb on + strand, within LU632_RS01975 at 378.740 kb on + strand, within LU632_RS01975 at 378.740 kb on + strand, within LU632_RS01975 at 378.742 kb on + strand, within LU632_RS01975 at 378.743 kb on - strand, within LU632_RS01975 at 378.753 kb on + strand, within LU632_RS01975 at 378.768 kb on - strand, within LU632_RS01975 at 378.874 kb on + strand, within LU632_RS01975 at 378.886 kb on + strand, within LU632_RS01975 at 378.957 kb on + strand, within LU632_RS01975 at 378.962 kb on + strand, within LU632_RS01975 at 378.968 kb on + strand, within LU632_RS01975 at 378.969 kb on - strand, within LU632_RS01975 at 379.032 kb on - strand, within LU632_RS01975 at 379.035 kb on - strand, within LU632_RS01975 at 379.079 kb on - strand, within LU632_RS01975 at 379.087 kb on + strand, within LU632_RS01975 at 379.209 kb on - strand, within LU632_RS01975 at 379.223 kb on - strand, within LU632_RS01975 at 379.237 kb on + strand, within LU632_RS01975 at 379.243 kb on - strand, within LU632_RS01975 at 379.304 kb on + strand, within LU632_RS01975 at 379.352 kb on - strand, within LU632_RS01975 at 379.361 kb on + strand, within LU632_RS01975 at 379.361 kb on + strand, within LU632_RS01975 at 379.363 kb on + strand, within LU632_RS01975 at 379.417 kb on + strand, within LU632_RS01975 at 379.434 kb on - strand, within LU632_RS01975 at 379.443 kb on + strand, within LU632_RS01975 at 379.449 kb on - strand, within LU632_RS01975 at 379.532 kb on - strand, within LU632_RS01975 at 379.574 kb on + strand, within LU632_RS01975 at 379.575 kb on - strand, within LU632_RS01975 at 379.577 kb on - strand, within LU632_RS01975 at 379.577 kb on - strand, within LU632_RS01975 at 379.760 kb on + strand, within LU632_RS01975 at 379.804 kb on + strand, within LU632_RS01975 at 379.870 kb on - strand, within LU632_RS01975 at 379.973 kb on + strand, within LU632_RS01975 at 380.646 kb on + strand at 380.669 kb on + strand at 380.972 kb on + strand, within LU632_RS01980 at 380.973 kb on - strand, within LU632_RS01980 at 381.134 kb on + strand, within LU632_RS01980 at 381.232 kb on - strand, within LU632_RS01980 at 381.269 kb on - strand, within LU632_RS01980 at 381.322 kb on - strand, within LU632_RS01980 at 381.375 kb on + strand, within LU632_RS01980 at 381.439 kb on - strand, within LU632_RS01980
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 377,079 - LU632_RS01965 0.76 -1.1 377,143 + LU632_RS01965 0.87 -2.1 377,144 - LU632_RS01965 0.87 -1.4 377,374 + +0.1 378,176 + -1.1 378,308 - LU632_RS01975 0.11 -1.5 378,371 + LU632_RS01975 0.13 -2.2 378,725 + LU632_RS01975 0.27 -1.7 378,726 - LU632_RS01975 0.27 -1.1 378,729 + LU632_RS01975 0.27 -0.9 378,740 + LU632_RS01975 0.27 -1.2 378,740 + LU632_RS01975 0.27 -1.5 378,742 + LU632_RS01975 0.27 -3.1 378,743 - LU632_RS01975 0.27 -3.2 378,753 + LU632_RS01975 0.28 -1.3 378,768 - LU632_RS01975 0.28 -1.5 378,874 + LU632_RS01975 0.32 -0.9 378,886 + LU632_RS01975 0.33 -2.2 378,957 + LU632_RS01975 0.35 -1.8 378,962 + LU632_RS01975 0.36 -0.6 378,968 + LU632_RS01975 0.36 -0.6 378,969 - LU632_RS01975 0.36 -2.4 379,032 - LU632_RS01975 0.38 -2.2 379,035 - LU632_RS01975 0.38 -0.9 379,079 - LU632_RS01975 0.40 -0.9 379,087 + LU632_RS01975 0.40 -0.7 379,209 - LU632_RS01975 0.45 -0.6 379,223 - LU632_RS01975 0.46 -1.8 379,237 + LU632_RS01975 0.46 -1.7 379,243 - LU632_RS01975 0.46 -2.3 379,304 + LU632_RS01975 0.49 -1.2 379,352 - LU632_RS01975 0.50 -2.4 379,361 + LU632_RS01975 0.51 -1.7 379,361 + LU632_RS01975 0.51 -0.8 379,363 + LU632_RS01975 0.51 -2.2 379,417 + LU632_RS01975 0.53 -1.7 379,434 - LU632_RS01975 0.54 -1.3 379,443 + LU632_RS01975 0.54 -1.1 379,449 - LU632_RS01975 0.54 -0.9 379,532 - LU632_RS01975 0.57 -2.6 379,574 + LU632_RS01975 0.59 -1.8 379,575 - LU632_RS01975 0.59 -1.8 379,577 - LU632_RS01975 0.59 -2.9 379,577 - LU632_RS01975 0.59 -1.1 379,760 + LU632_RS01975 0.66 -1.3 379,804 + LU632_RS01975 0.68 -1.5 379,870 - LU632_RS01975 0.70 -1.0 379,973 + LU632_RS01975 0.74 -1.5 380,646 + -0.3 380,669 + -0.6 380,972 + LU632_RS01980 0.27 +2.1 380,973 - LU632_RS01980 0.27 -2.6 381,134 + LU632_RS01980 0.45 -0.1 381,232 - LU632_RS01980 0.55 +1.1 381,269 - LU632_RS01980 0.60 +0.5 381,322 - LU632_RS01980 0.65 +0.3 381,375 + LU632_RS01980 0.71 +0.0 381,439 - LU632_RS01980 0.78 -0.2
Or see this region's nucleotide sequence