Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01595 and gpM are separated by 45 nucleotides gpM and LU632_RS01605 are separated by 96 nucleotides LU632_RS01605 and LU632_RS01610 overlap by 1 nucleotides LU632_RS01610 and LU632_RS01615 overlap by 10 nucleotides
LU632_RS01595: LU632_RS01595 - phage major capsid protein, P2 family, at 319,621 to 320,670
_RS01595
LU632_RS01600: gpM - phage terminase small subunit, at 320,716 to 321,573
gpM
LU632_RS01605: LU632_RS01605 - head completion/stabilization protein, at 321,670 to 322,194
_RS01605
LU632_RS01610: LU632_RS01610 - tail protein X, at 322,194 to 322,394
_RS01610
LU632_RS01615: LU632_RS01615 - hypothetical protein, at 322,385 to 322,687
_RS01615
Position (kb) 320
321
322 Strain fitness (log2 ratio) -1
0
1 at 319.918 kb on + strand, within LU632_RS01595 at 319.918 kb on + strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.939 kb on + strand, within LU632_RS01595 at 319.939 kb on + strand, within LU632_RS01595 at 319.940 kb on - strand, within LU632_RS01595 at 319.940 kb on - strand, within LU632_RS01595 at 319.983 kb on + strand, within LU632_RS01595 at 320.071 kb on + strand, within LU632_RS01595 at 320.072 kb on - strand, within LU632_RS01595 at 320.072 kb on - strand, within LU632_RS01595 at 320.202 kb on + strand, within LU632_RS01595 at 320.203 kb on - strand, within LU632_RS01595 at 320.292 kb on + strand, within LU632_RS01595 at 320.427 kb on - strand, within LU632_RS01595 at 320.455 kb on + strand, within LU632_RS01595 at 320.455 kb on + strand, within LU632_RS01595 at 320.465 kb on + strand, within LU632_RS01595 at 320.506 kb on + strand, within LU632_RS01595 at 320.506 kb on + strand, within LU632_RS01595 at 320.507 kb on - strand, within LU632_RS01595 at 320.509 kb on + strand, within LU632_RS01595 at 320.510 kb on - strand, within LU632_RS01595 at 320.720 kb on + strand at 320.833 kb on - strand, within gpM at 321.005 kb on - strand, within gpM at 321.031 kb on + strand, within gpM at 321.031 kb on + strand, within gpM at 321.032 kb on - strand, within gpM at 321.207 kb on + strand, within gpM at 321.207 kb on + strand, within gpM at 321.208 kb on - strand, within gpM at 321.208 kb on - strand, within gpM at 321.610 kb on + strand at 321.665 kb on + strand at 321.690 kb on + strand at 321.690 kb on + strand at 321.691 kb on - strand at 321.935 kb on + strand, within LU632_RS01605 at 321.935 kb on + strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 322.282 kb on + strand, within LU632_RS01610 at 322.283 kb on - strand, within LU632_RS01610 at 322.378 kb on + strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 319,918 + LU632_RS01595 0.28 +0.0 319,918 + LU632_RS01595 0.28 -0.1 319,919 - LU632_RS01595 0.28 -0.2 319,919 - LU632_RS01595 0.28 +0.2 319,919 - LU632_RS01595 0.28 +0.1 319,939 + LU632_RS01595 0.30 +0.3 319,939 + LU632_RS01595 0.30 -1.7 319,940 - LU632_RS01595 0.30 +0.6 319,940 - LU632_RS01595 0.30 -0.6 319,983 + LU632_RS01595 0.34 -1.3 320,071 + LU632_RS01595 0.43 +0.5 320,072 - LU632_RS01595 0.43 +0.6 320,072 - LU632_RS01595 0.43 -0.3 320,202 + LU632_RS01595 0.55 -0.7 320,203 - LU632_RS01595 0.55 +0.9 320,292 + LU632_RS01595 0.64 +0.3 320,427 - LU632_RS01595 0.77 +0.1 320,455 + LU632_RS01595 0.79 +0.2 320,455 + LU632_RS01595 0.79 +0.1 320,465 + LU632_RS01595 0.80 +0.3 320,506 + LU632_RS01595 0.84 -0.3 320,506 + LU632_RS01595 0.84 +0.6 320,507 - LU632_RS01595 0.84 -0.4 320,509 + LU632_RS01595 0.85 -0.7 320,510 - LU632_RS01595 0.85 -0.5 320,720 + -0.2 320,833 - gpM LU632_RS01600 0.14 -0.1 321,005 - gpM LU632_RS01600 0.34 -0.8 321,031 + gpM LU632_RS01600 0.37 -1.4 321,031 + gpM LU632_RS01600 0.37 +0.1 321,032 - gpM LU632_RS01600 0.37 -0.9 321,207 + gpM LU632_RS01600 0.57 -1.1 321,207 + gpM LU632_RS01600 0.57 -1.0 321,208 - gpM LU632_RS01600 0.57 -1.4 321,208 - gpM LU632_RS01600 0.57 +0.9 321,610 + -0.5 321,665 + +1.2 321,690 + +1.7 321,690 + +0.1 321,691 - -1.4 321,935 + LU632_RS01605 0.50 +0.9 321,935 + LU632_RS01605 0.50 -0.5 321,936 - LU632_RS01605 0.51 +0.5 321,936 - LU632_RS01605 0.51 +0.2 321,936 - LU632_RS01605 0.51 +0.1 321,936 - LU632_RS01605 0.51 +0.5 322,282 + LU632_RS01610 0.44 -0.8 322,283 - LU632_RS01610 0.44 -0.2 322,378 + +0.0 322,379 - +1.5 322,379 - -0.4 322,379 - +0.1
Or see this region's nucleotide sequence