Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01260 and LU632_RS01265 are separated by 174 nucleotides LU632_RS01265 and ulaR are separated by 75 nucleotides ulaR and ulaG are separated by 105 nucleotides
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
LU632_RS01265: LU632_RS01265 - hypothetical protein, at 264,087 to 264,224
_RS01265
LU632_RS01270: ulaR - HTH-type transcriptional regulator UlaR, at 264,300 to 265,055
ulaR
LU632_RS01275: ulaG - L-ascorbate 6-phosphate lactonase, at 265,161 to 266,225
ulaG
Position (kb) 264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 263.347 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.514 kb on - strand, within LU632_RS01260 at 263.601 kb on - strand, within LU632_RS01260 at 263.621 kb on + strand, within LU632_RS01260 at 263.672 kb on + strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.677 kb on - strand, within LU632_RS01260 at 263.682 kb on + strand, within LU632_RS01260 at 263.715 kb on - strand, within LU632_RS01260 at 263.735 kb on - strand, within LU632_RS01260 at 263.825 kb on + strand, within LU632_RS01260 at 263.967 kb on + strand at 263.975 kb on + strand at 263.976 kb on - strand at 263.977 kb on + strand at 264.037 kb on - strand at 264.056 kb on - strand at 264.060 kb on - strand at 264.060 kb on - strand at 264.100 kb on - strand at 264.127 kb on - strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.253 kb on + strand at 264.255 kb on + strand at 264.268 kb on - strand at 264.268 kb on - strand at 264.354 kb on - strand at 264.354 kb on - strand at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.504 kb on - strand, within ulaR at 264.515 kb on - strand, within ulaR at 264.517 kb on - strand, within ulaR at 264.550 kb on + strand, within ulaR at 264.568 kb on + strand, within ulaR at 264.670 kb on + strand, within ulaR at 264.688 kb on + strand, within ulaR at 264.689 kb on - strand, within ulaR at 264.693 kb on - strand, within ulaR at 264.846 kb on - strand, within ulaR at 264.878 kb on + strand, within ulaR at 264.879 kb on - strand, within ulaR at 264.905 kb on + strand, within ulaR at 264.965 kb on + strand, within ulaR at 264.999 kb on - strand at 264.999 kb on - strand at 264.999 kb on - strand at 265.034 kb on + strand at 265.141 kb on + strand at 265.156 kb on + strand at 265.156 kb on + strand at 265.376 kb on + strand, within ulaG at 265.377 kb on - strand, within ulaG at 265.394 kb on + strand, within ulaG at 265.395 kb on - strand, within ulaG at 265.407 kb on - strand, within ulaG at 265.407 kb on - strand, within ulaG at 265.428 kb on + strand, within ulaG at 265.429 kb on - strand, within ulaG at 265.433 kb on + strand, within ulaG at 265.506 kb on - strand, within ulaG at 265.506 kb on - strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.533 kb on - strand, within ulaG at 265.533 kb on - strand, within ulaG at 265.540 kb on + strand, within ulaG at 265.592 kb on - strand, within ulaG at 265.616 kb on + strand, within ulaG at 265.712 kb on + strand, within ulaG at 265.738 kb on - strand, within ulaG at 265.770 kb on + strand, within ulaG
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 263,347 + LU632_RS01260 0.34 -0.7 263,511 + LU632_RS01260 0.53 -0.3 263,511 + LU632_RS01260 0.53 -0.5 263,512 - LU632_RS01260 0.53 -1.3 263,512 - LU632_RS01260 0.53 +0.3 263,513 + LU632_RS01260 0.54 -0.2 263,513 + LU632_RS01260 0.54 +0.1 263,514 - LU632_RS01260 0.54 +0.1 263,601 - LU632_RS01260 0.64 +0.1 263,621 + LU632_RS01260 0.66 -0.0 263,672 + LU632_RS01260 0.72 -0.4 263,673 - LU632_RS01260 0.72 -1.7 263,673 - LU632_RS01260 0.72 +0.5 263,673 - LU632_RS01260 0.72 +0.0 263,677 - LU632_RS01260 0.73 +0.6 263,682 + LU632_RS01260 0.73 +0.3 263,715 - LU632_RS01260 0.77 -0.4 263,735 - LU632_RS01260 0.79 -1.2 263,825 + LU632_RS01260 0.90 -0.2 263,967 + +0.3 263,975 + +0.6 263,976 - +0.8 263,977 + -0.1 264,037 - -0.4 264,056 - +0.6 264,060 - -0.1 264,060 - +1.5 264,100 - +0.0 264,127 - LU632_RS01265 0.29 -1.1 264,147 + LU632_RS01265 0.43 -0.2 264,147 + LU632_RS01265 0.43 -0.4 264,253 + -0.1 264,255 + +0.3 264,268 - +0.3 264,268 - -0.1 264,354 - -0.1 264,354 - +1.5 264,467 - ulaR LU632_RS01270 0.22 +0.1 264,467 - ulaR LU632_RS01270 0.22 -0.3 264,467 - ulaR LU632_RS01270 0.22 -0.5 264,467 - ulaR LU632_RS01270 0.22 -1.4 264,504 - ulaR LU632_RS01270 0.27 -0.7 264,515 - ulaR LU632_RS01270 0.28 -1.4 264,517 - ulaR LU632_RS01270 0.29 -0.7 264,550 + ulaR LU632_RS01270 0.33 -0.7 264,568 + ulaR LU632_RS01270 0.35 +2.5 264,670 + ulaR LU632_RS01270 0.49 -1.3 264,688 + ulaR LU632_RS01270 0.51 +0.1 264,689 - ulaR LU632_RS01270 0.51 +1.6 264,693 - ulaR LU632_RS01270 0.52 -0.4 264,846 - ulaR LU632_RS01270 0.72 +1.5 264,878 + ulaR LU632_RS01270 0.76 -0.9 264,879 - ulaR LU632_RS01270 0.77 -0.1 264,905 + ulaR LU632_RS01270 0.80 +0.9 264,965 + ulaR LU632_RS01270 0.88 +0.9 264,999 - -1.1 264,999 - -1.1 264,999 - -0.3 265,034 + +0.9 265,141 + -0.7 265,156 + +0.4 265,156 + -3.5 265,376 + ulaG LU632_RS01275 0.20 -0.4 265,377 - ulaG LU632_RS01275 0.20 +0.8 265,394 + ulaG LU632_RS01275 0.22 -0.1 265,395 - ulaG LU632_RS01275 0.22 -0.1 265,407 - ulaG LU632_RS01275 0.23 -0.1 265,407 - ulaG LU632_RS01275 0.23 -0.9 265,428 + ulaG LU632_RS01275 0.25 +0.0 265,429 - ulaG LU632_RS01275 0.25 -0.3 265,433 + ulaG LU632_RS01275 0.26 -1.1 265,506 - ulaG LU632_RS01275 0.32 -0.3 265,506 - ulaG LU632_RS01275 0.32 +0.4 265,528 + ulaG LU632_RS01275 0.34 -0.2 265,528 + ulaG LU632_RS01275 0.34 -0.2 265,528 + ulaG LU632_RS01275 0.34 -0.3 265,529 - ulaG LU632_RS01275 0.35 -0.2 265,529 - ulaG LU632_RS01275 0.35 -0.5 265,529 - ulaG LU632_RS01275 0.35 +0.2 265,533 - ulaG LU632_RS01275 0.35 +0.2 265,533 - ulaG LU632_RS01275 0.35 -0.2 265,540 + ulaG LU632_RS01275 0.36 -0.2 265,592 - ulaG LU632_RS01275 0.40 -0.3 265,616 + ulaG LU632_RS01275 0.43 +0.3 265,712 + ulaG LU632_RS01275 0.52 +0.5 265,738 - ulaG LU632_RS01275 0.54 -1.1 265,770 + ulaG LU632_RS01275 0.57 -1.4
Or see this region's nucleotide sequence