Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssM and LU632_RS00745 are separated by 51 nucleotides LU632_RS00745 and vgrG are separated by 126 nucleotides
LU632_RS00740: tssM - type VI secretion system membrane subunit TssM, at 156,378 to 160,139
tssM
LU632_RS00745: LU632_RS00745 - hypothetical protein, at 160,191 to 160,835
_RS00745
LU632_RS00750: vgrG - type VI secretion system tip protein VgrG, at 160,962 to 163,334
vgrG
Position (kb) 160
161 Strain fitness (log2 ratio) -1
0
1 at 159.205 kb on + strand, within tssM at 159.285 kb on + strand, within tssM at 159.285 kb on - strand, within tssM at 159.286 kb on - strand, within tssM at 159.287 kb on + strand, within tssM at 159.287 kb on + strand, within tssM at 159.288 kb on - strand, within tssM at 159.288 kb on - strand, within tssM at 159.395 kb on + strand, within tssM at 159.396 kb on - strand, within tssM at 159.399 kb on + strand, within tssM at 159.402 kb on - strand, within tssM at 159.404 kb on + strand, within tssM at 159.416 kb on - strand, within tssM at 159.468 kb on - strand, within tssM at 159.504 kb on - strand, within tssM at 159.539 kb on + strand, within tssM at 159.584 kb on - strand, within tssM at 159.609 kb on - strand, within tssM at 159.752 kb on + strand, within tssM at 159.771 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.789 kb on - strand at 159.789 kb on - strand at 159.811 kb on + strand at 159.938 kb on - strand at 160.038 kb on - strand at 160.114 kb on + strand at 160.441 kb on + strand, within LU632_RS00745 at 160.798 kb on - strand at 161.032 kb on + strand at 161.032 kb on + strand at 161.036 kb on + strand at 161.036 kb on + strand at 161.037 kb on - strand at 161.318 kb on - strand, within vgrG at 161.403 kb on + strand, within vgrG at 161.579 kb on + strand, within vgrG at 161.586 kb on + strand, within vgrG at 161.586 kb on + strand, within vgrG at 161.588 kb on + strand, within vgrG at 161.589 kb on - strand, within vgrG at 161.669 kb on + strand, within vgrG at 161.670 kb on - strand, within vgrG at 161.761 kb on - strand, within vgrG
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 159,205 + tssM LU632_RS00740 0.75 -0.4 159,285 + tssM LU632_RS00740 0.77 +0.2 159,285 - tssM LU632_RS00740 0.77 -0.8 159,286 - tssM LU632_RS00740 0.77 +0.1 159,287 + tssM LU632_RS00740 0.77 -0.3 159,287 + tssM LU632_RS00740 0.77 +0.2 159,288 - tssM LU632_RS00740 0.77 +0.0 159,288 - tssM LU632_RS00740 0.77 +0.0 159,395 + tssM LU632_RS00740 0.80 -0.1 159,396 - tssM LU632_RS00740 0.80 -0.9 159,399 + tssM LU632_RS00740 0.80 -0.3 159,402 - tssM LU632_RS00740 0.80 -0.5 159,404 + tssM LU632_RS00740 0.80 +0.4 159,416 - tssM LU632_RS00740 0.81 -0.2 159,468 - tssM LU632_RS00740 0.82 -0.1 159,504 - tssM LU632_RS00740 0.83 -0.9 159,539 + tssM LU632_RS00740 0.84 +0.1 159,584 - tssM LU632_RS00740 0.85 -0.1 159,609 - tssM LU632_RS00740 0.86 -0.2 159,752 + tssM LU632_RS00740 0.90 -0.2 159,771 - +1.5 159,787 - +0.6 159,787 - -0.6 159,787 - +0.3 159,788 + +0.2 159,788 + -0.1 159,788 + -0.2 159,788 + -1.0 159,789 - -0.4 159,789 - -0.1 159,811 + -0.3 159,938 - -0.7 160,038 - -0.5 160,114 + -0.3 160,441 + LU632_RS00745 0.39 -0.6 160,798 - +0.2 161,032 + -0.4 161,032 + +0.3 161,036 + +0.1 161,036 + +0.6 161,037 - +0.1 161,318 - vgrG LU632_RS00750 0.15 -0.1 161,403 + vgrG LU632_RS00750 0.19 -0.3 161,579 + vgrG LU632_RS00750 0.26 -0.5 161,586 + vgrG LU632_RS00750 0.26 +0.0 161,586 + vgrG LU632_RS00750 0.26 -0.3 161,588 + vgrG LU632_RS00750 0.26 -0.3 161,589 - vgrG LU632_RS00750 0.26 +0.5 161,669 + vgrG LU632_RS00750 0.30 +0.0 161,670 - vgrG LU632_RS00750 0.30 -0.1 161,761 - vgrG LU632_RS00750 0.34 -0.1
Or see this region's nucleotide sequence