Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00235

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00225 and LU632_RS00230 are separated by 29 nucleotidesLU632_RS00230 and LU632_RS00235 are separated by 61 nucleotidesLU632_RS00235 and LU632_RS00240 are separated by 105 nucleotidesLU632_RS00240 and eptB are separated by 277 nucleotides LU632_RS00225: LU632_RS00225 - RcnB family protein, at 43,780 to 44,262 _RS00225 LU632_RS00230: LU632_RS00230 - HD domain-containing protein, at 44,292 to 44,882 _RS00230 LU632_RS00235: LU632_RS00235 - MarR family transcriptional regulator, at 44,944 to 45,402 _RS00235 LU632_RS00240: LU632_RS00240 - organic hydroperoxide resistance protein, at 45,508 to 45,936 _RS00240 LU632_RS00245: eptB - 'kdo(2)-lipid A phosphoethanolamine 7''-transferase' pseudo=_no_value transl_table=11, at 46,214 to 47,913 eptB Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 44.029 kb on + strand, within LU632_RS00225at 44.037 kb on - strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.175 kb on + strand, within LU632_RS00225at 44.175 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.189 kb on - strand, within LU632_RS00225at 44.197 kb on + strand, within LU632_RS00225at 44.249 kb on - strandat 44.249 kb on - strandat 44.250 kb on + strandat 44.251 kb on - strandat 44.414 kb on + strand, within LU632_RS00230at 44.414 kb on + strand, within LU632_RS00230at 44.414 kb on + strand, within LU632_RS00230at 44.415 kb on - strand, within LU632_RS00230at 44.440 kb on - strand, within LU632_RS00230at 44.511 kb on - strand, within LU632_RS00230at 44.621 kb on + strand, within LU632_RS00230at 44.621 kb on + strand, within LU632_RS00230at 44.622 kb on - strand, within LU632_RS00230at 44.696 kb on + strand, within LU632_RS00230at 44.696 kb on + strand, within LU632_RS00230at 44.697 kb on - strand, within LU632_RS00230at 44.697 kb on - strand, within LU632_RS00230at 44.697 kb on - strand, within LU632_RS00230at 44.697 kb on - strand, within LU632_RS00230at 44.794 kb on + strand, within LU632_RS00230at 44.794 kb on + strand, within LU632_RS00230at 44.795 kb on - strand, within LU632_RS00230at 44.795 kb on - strand, within LU632_RS00230at 44.807 kb on + strand, within LU632_RS00230at 44.809 kb on + strand, within LU632_RS00230at 44.809 kb on + strand, within LU632_RS00230at 44.809 kb on + strand, within LU632_RS00230at 44.810 kb on - strand, within LU632_RS00230at 44.810 kb on - strand, within LU632_RS00230at 44.810 kb on - strand, within LU632_RS00230at 44.912 kb on + strandat 44.912 kb on + strandat 44.913 kb on - strandat 44.915 kb on + strandat 44.915 kb on + strandat 44.915 kb on + strandat 44.916 kb on - strandat 44.916 kb on - strandat 44.917 kb on + strandat 44.917 kb on + strandat 44.927 kb on + strandat 44.927 kb on + strandat 44.931 kb on + strandat 44.931 kb on + strandat 44.931 kb on + strandat 44.931 kb on + strandat 44.932 kb on - strandat 44.932 kb on - strandat 44.933 kb on + strandat 44.955 kb on + strandat 45.078 kb on + strand, within LU632_RS00235at 45.078 kb on + strand, within LU632_RS00235at 45.078 kb on + strand, within LU632_RS00235at 45.079 kb on - strand, within LU632_RS00235at 45.079 kb on - strand, within LU632_RS00235at 45.079 kb on - strand, within LU632_RS00235at 45.254 kb on + strand, within LU632_RS00235at 45.487 kb on + strandat 45.488 kb on - strandat 45.527 kb on + strandat 45.527 kb on + strandat 45.528 kb on - strandat 45.529 kb on + strandat 45.612 kb on - strand, within LU632_RS00240at 45.644 kb on + strand, within LU632_RS00240at 45.648 kb on + strand, within LU632_RS00240at 45.733 kb on - strand, within LU632_RS00240at 45.751 kb on - strand, within LU632_RS00240at 45.813 kb on + strand, within LU632_RS00240at 45.814 kb on - strand, within LU632_RS00240at 45.814 kb on - strand, within LU632_RS00240at 45.814 kb on - strand, within LU632_RS00240at 45.815 kb on + strand, within LU632_RS00240at 45.815 kb on + strand, within LU632_RS00240at 45.815 kb on + strand, within LU632_RS00240at 45.815 kb on + strand, within LU632_RS00240at 45.940 kb on + strandat 46.019 kb on + strandat 46.019 kb on + strandat 46.038 kb on + strandat 46.041 kb on + strandat 46.051 kb on + strandat 46.110 kb on - strandat 46.123 kb on + strandat 46.180 kb on + strandat 46.180 kb on + strandat 46.220 kb on + strandat 46.221 kb on - strandat 46.224 kb on + strandat 46.268 kb on + strandat 46.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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44,029 + LU632_RS00225 0.52 +0.3
44,037 - LU632_RS00225 0.53 -0.3
44,173 + LU632_RS00225 0.81 -0.8
44,173 + LU632_RS00225 0.81 -0.9
44,173 + LU632_RS00225 0.81 -0.9
44,173 + LU632_RS00225 0.81 -2.3
44,174 - LU632_RS00225 0.82 +0.6
44,174 - LU632_RS00225 0.82 -0.4
44,174 - LU632_RS00225 0.82 -1.0
44,174 - LU632_RS00225 0.82 -0.4
44,174 - LU632_RS00225 0.82 -0.4
44,175 + LU632_RS00225 0.82 -0.0
44,175 + LU632_RS00225 0.82 -0.1
44,188 + LU632_RS00225 0.84 +0.5
44,188 + LU632_RS00225 0.84 +0.3
44,188 + LU632_RS00225 0.84 +0.1
44,189 - LU632_RS00225 0.85 -0.1
44,197 + LU632_RS00225 0.86 -2.1
44,249 - -0.6
44,249 - +0.5
44,250 + -0.0
44,251 - -0.4
44,414 + LU632_RS00230 0.21 +0.6
44,414 + LU632_RS00230 0.21 -0.3
44,414 + LU632_RS00230 0.21 -0.9
44,415 - LU632_RS00230 0.21 -0.5
44,440 - LU632_RS00230 0.25 +0.4
44,511 - LU632_RS00230 0.37 -0.3
44,621 + LU632_RS00230 0.56 -1.1
44,621 + LU632_RS00230 0.56 -0.1
44,622 - LU632_RS00230 0.56 +0.4
44,696 + LU632_RS00230 0.68 +0.0
44,696 + LU632_RS00230 0.68 -0.1
44,697 - LU632_RS00230 0.69 +0.9
44,697 - LU632_RS00230 0.69 -0.5
44,697 - LU632_RS00230 0.69 +0.2
44,697 - LU632_RS00230 0.69 +0.2
44,794 + LU632_RS00230 0.85 +0.5
44,794 + LU632_RS00230 0.85 -0.5
44,795 - LU632_RS00230 0.85 +0.3
44,795 - LU632_RS00230 0.85 +0.7
44,807 + LU632_RS00230 0.87 -0.3
44,809 + LU632_RS00230 0.87 -0.2
44,809 + LU632_RS00230 0.87 +0.1
44,809 + LU632_RS00230 0.87 -0.6
44,810 - LU632_RS00230 0.88 +0.4
44,810 - LU632_RS00230 0.88 +0.3
44,810 - LU632_RS00230 0.88 -0.7
44,912 + +0.4
44,912 + +1.0
44,913 - -0.1
44,915 + +0.3
44,915 + -0.1
44,915 + -0.1
44,916 - -0.1
44,916 - -0.9
44,917 + -1.0
44,917 + -0.1
44,927 + +0.4
44,927 + -0.0
44,931 + +0.4
44,931 + -0.1
44,931 + +0.0
44,931 + +0.2
44,932 - +0.4
44,932 - -0.5
44,933 + +0.1
44,955 + +0.1
45,078 + LU632_RS00235 0.29 -0.3
45,078 + LU632_RS00235 0.29 -0.5
45,078 + LU632_RS00235 0.29 -0.6
45,079 - LU632_RS00235 0.29 -0.9
45,079 - LU632_RS00235 0.29 -0.0
45,079 - LU632_RS00235 0.29 -0.4
45,254 + LU632_RS00235 0.68 +0.4
45,487 + +0.4
45,488 - +1.3
45,527 + -1.4
45,527 + -0.5
45,528 - +0.4
45,529 + +1.9
45,612 - LU632_RS00240 0.24 +0.8
45,644 + LU632_RS00240 0.32 +0.5
45,648 + LU632_RS00240 0.33 -1.1
45,733 - LU632_RS00240 0.52 -0.1
45,751 - LU632_RS00240 0.57 -1.1
45,813 + LU632_RS00240 0.71 +1.5
45,814 - LU632_RS00240 0.71 -0.1
45,814 - LU632_RS00240 0.71 -0.1
45,814 - LU632_RS00240 0.71 +0.4
45,815 + LU632_RS00240 0.72 +0.1
45,815 + LU632_RS00240 0.72 -0.3
45,815 + LU632_RS00240 0.72 -0.3
45,815 + LU632_RS00240 0.72 +0.1
45,940 + -0.9
46,019 + +0.9
46,019 + -0.1
46,038 + +0.7
46,041 + -0.2
46,051 + +0.6
46,110 - -0.0
46,123 + -0.2
46,180 + -0.4
46,180 + -0.3
46,220 + -0.1
46,221 - -0.3
46,224 + +0.0
46,268 + +0.1
46,268 + +0.1

Or see this region's nucleotide sequence