Strain Fitness in Escherichia coli BL21 around ECD_t00039

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02303 and ECD_t00039 are separated by 208 nucleotidesECD_t00039 and ECD_t00040 are separated by 39 nucleotidesECD_t00040 and ECD_02304 are separated by 235 nucleotidesECD_02304 and ECD_02305 are separated by 1 nucleotides ECD_02303: ECD_02303 - putative diguanylate cyclase, at 2,392,180 to 2,394,369 _02303 ECD_t00039: ECD_t00039 - tRNA-Ala, at 2,394,578 to 2,394,653 _t00039 ECD_t00040: ECD_t00040 - tRNA-Ala, at 2,394,693 to 2,394,768 _t00040 ECD_02304: ECD_02304 - DUF1323 family putative DNA-binding protein, at 2,395,004 to 2,395,348 _02304 ECD_02305: ECD_02305 - DUF1323 family putative DNA-binding protein, at 2,395,350 to 2,395,742 _02305 Position (kb) 2394 2395Strain fitness (log2 ratio) -2 -1 0 1at 2393.724 kb on + strand, within ECD_02303at 2393.725 kb on - strand, within ECD_02303at 2393.777 kb on - strand, within ECD_02303at 2393.798 kb on - strand, within ECD_02303at 2393.834 kb on + strand, within ECD_02303at 2393.835 kb on - strand, within ECD_02303at 2393.861 kb on - strand, within ECD_02303at 2393.948 kb on + strand, within ECD_02303at 2393.948 kb on + strand, within ECD_02303at 2393.948 kb on + strand, within ECD_02303at 2393.948 kb on + strand, within ECD_02303at 2393.949 kb on - strand, within ECD_02303at 2394.061 kb on + strand, within ECD_02303at 2394.298 kb on - strandat 2394.323 kb on - strandat 2394.379 kb on - strandat 2394.508 kb on + strandat 2394.509 kb on - strandat 2394.588 kb on - strand, within ECD_t00039at 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.646 kb on - strandat 2394.776 kb on - strandat 2394.806 kb on - strandat 2394.911 kb on + strandat 2394.912 kb on - strandat 2394.945 kb on + strandat 2394.955 kb on + strandat 2394.972 kb on - strandat 2394.972 kb on - strandat 2395.057 kb on + strand, within ECD_02304at 2395.057 kb on + strand, within ECD_02304at 2395.057 kb on + strand, within ECD_02304at 2395.228 kb on - strand, within ECD_02304at 2395.279 kb on + strand, within ECD_02304at 2395.280 kb on - strand, within ECD_02304at 2395.346 kb on + strandat 2395.346 kb on + strandat 2395.346 kb on + strandat 2395.349 kb on + strandat 2395.409 kb on + strand, within ECD_02305at 2395.524 kb on - strand, within ECD_02305at 2395.647 kb on - strand, within ECD_02305

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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2,393,724 + ECD_02303 0.71 +1.4
2,393,725 - ECD_02303 0.71 +0.9
2,393,777 - ECD_02303 0.73 -0.1
2,393,798 - ECD_02303 0.74 -1.0
2,393,834 + ECD_02303 0.76 +0.3
2,393,835 - ECD_02303 0.76 +0.5
2,393,861 - ECD_02303 0.77 +0.3
2,393,948 + ECD_02303 0.81 -0.2
2,393,948 + ECD_02303 0.81 -0.8
2,393,948 + ECD_02303 0.81 +0.2
2,393,948 + ECD_02303 0.81 +0.8
2,393,949 - ECD_02303 0.81 +0.1
2,394,061 + ECD_02303 0.86 +0.5
2,394,298 - -1.3
2,394,323 - +0.0
2,394,379 - -0.8
2,394,508 + +1.0
2,394,509 - -1.6
2,394,588 - ECD_t00039 0.13 -1.1
2,394,646 - -0.3
2,394,646 - +0.2
2,394,646 - -0.4
2,394,646 - +0.0
2,394,646 - +0.6
2,394,646 - +0.6
2,394,646 - -0.4
2,394,646 - -0.2
2,394,776 - -0.1
2,394,806 - -0.5
2,394,911 + -0.5
2,394,912 - +0.0
2,394,945 + +0.3
2,394,955 + +1.0
2,394,972 - +0.1
2,394,972 - +1.4
2,395,057 + ECD_02304 0.15 -0.4
2,395,057 + ECD_02304 0.15 -2.3
2,395,057 + ECD_02304 0.15 +0.8
2,395,228 - ECD_02304 0.65 -0.2
2,395,279 + ECD_02304 0.80 +0.0
2,395,280 - ECD_02304 0.80 +1.2
2,395,346 + +0.8
2,395,346 + -0.1
2,395,346 + -0.8
2,395,349 + +0.1
2,395,409 + ECD_02305 0.15 +0.4
2,395,524 - ECD_02305 0.44 -0.1
2,395,647 - ECD_02305 0.76 +0.5

Or see this region's nucleotide sequence