Strain Fitness in Escherichia coli BL21 around ECD_04153

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04152 and ECD_04153 are separated by 556 nucleotidesECD_04153 and ECD_04154 are separated by 0 nucleotidesECD_04154 and ECD_04155 overlap by 4 nucleotides ECD_04152: ECD_04152 - hypothetical protein, at 4,423,117 to 4,423,530 _04152 ECD_04153: ECD_04153 - ferric citrate ABC transporter ATPase, at 4,424,087 to 4,424,854 _04153 ECD_04154: ECD_04154 - ferric citrate ABC transporter permease, at 4,424,855 to 4,425,811 _04154 ECD_04155: ECD_04155 - ferric citrate ABC transporter permease, at 4,425,808 to 4,426,806 _04155 Position (kb) 4424 4425Strain fitness (log2 ratio) -2 -1 0 1at 4423.089 kb on + strandat 4423.113 kb on + strandat 4423.113 kb on + strandat 4423.115 kb on + strandat 4423.115 kb on + strandat 4423.185 kb on - strand, within ECD_04152at 4423.202 kb on + strand, within ECD_04152at 4423.202 kb on + strand, within ECD_04152at 4423.202 kb on + strand, within ECD_04152at 4423.203 kb on - strand, within ECD_04152at 4423.238 kb on + strand, within ECD_04152at 4423.263 kb on - strand, within ECD_04152at 4423.263 kb on - strand, within ECD_04152at 4423.361 kb on - strand, within ECD_04152at 4423.462 kb on - strand, within ECD_04152at 4423.492 kb on - strandat 4423.492 kb on - strandat 4423.526 kb on + strandat 4423.526 kb on + strandat 4423.563 kb on - strandat 4423.563 kb on - strandat 4423.566 kb on + strandat 4423.566 kb on + strandat 4423.566 kb on + strandat 4423.566 kb on + strandat 4423.566 kb on + strandat 4423.566 kb on + strandat 4423.566 kb on + strandat 4423.567 kb on - strandat 4423.567 kb on - strandat 4423.567 kb on - strandat 4423.571 kb on - strandat 4423.571 kb on - strandat 4423.571 kb on - strandat 4423.571 kb on - strandat 4423.571 kb on - strandat 4423.571 kb on - strandat 4423.650 kb on + strandat 4423.651 kb on - strandat 4423.674 kb on + strandat 4423.774 kb on + strandat 4423.978 kb on + strandat 4424.088 kb on + strandat 4424.133 kb on - strandat 4424.206 kb on + strand, within ECD_04153at 4424.260 kb on + strand, within ECD_04153at 4424.344 kb on + strand, within ECD_04153at 4424.352 kb on + strand, within ECD_04153at 4424.353 kb on - strand, within ECD_04153at 4424.373 kb on - strand, within ECD_04153at 4424.375 kb on + strand, within ECD_04153at 4424.497 kb on + strand, within ECD_04153at 4424.560 kb on - strand, within ECD_04153at 4424.598 kb on - strand, within ECD_04153at 4424.598 kb on - strand, within ECD_04153at 4424.653 kb on + strand, within ECD_04153at 4424.654 kb on - strand, within ECD_04153at 4424.654 kb on - strand, within ECD_04153at 4424.654 kb on - strand, within ECD_04153at 4424.654 kb on - strand, within ECD_04153at 4424.678 kb on + strand, within ECD_04153at 4424.721 kb on - strand, within ECD_04153at 4424.746 kb on + strand, within ECD_04153at 4424.800 kb on + strandat 4424.801 kb on - strandat 4424.801 kb on - strandat 4424.801 kb on - strandat 4424.805 kb on - strandat 4424.805 kb on - strandat 4424.805 kb on - strandat 4424.944 kb on + strandat 4424.944 kb on + strandat 4424.944 kb on + strandat 4424.945 kb on - strandat 4424.945 kb on - strandat 4425.046 kb on + strand, within ECD_04154at 4425.047 kb on - strand, within ECD_04154at 4425.101 kb on - strand, within ECD_04154at 4425.120 kb on - strand, within ECD_04154at 4425.120 kb on - strand, within ECD_04154at 4425.123 kb on - strand, within ECD_04154at 4425.288 kb on - strand, within ECD_04154at 4425.440 kb on + strand, within ECD_04154at 4425.505 kb on + strand, within ECD_04154at 4425.512 kb on + strand, within ECD_04154at 4425.512 kb on + strand, within ECD_04154at 4425.513 kb on - strand, within ECD_04154at 4425.674 kb on + strand, within ECD_04154at 4425.674 kb on + strand, within ECD_04154at 4425.675 kb on - strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.678 kb on + strand, within ECD_04154at 4425.679 kb on - strand, within ECD_04154at 4425.679 kb on - strand, within ECD_04154at 4425.679 kb on - strand, within ECD_04154at 4425.681 kb on + strand, within ECD_04154at 4425.681 kb on + strand, within ECD_04154at 4425.681 kb on + strand, within ECD_04154at 4425.682 kb on - strand, within ECD_04154at 4425.755 kb on + strandat 4425.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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4,423,089 + +0.2
4,423,113 + -0.4
4,423,113 + -0.6
4,423,115 + -0.3
4,423,115 + -0.7
4,423,185 - ECD_04152 0.16 +1.1
4,423,202 + ECD_04152 0.21 +0.4
4,423,202 + ECD_04152 0.21 +1.3
4,423,202 + ECD_04152 0.21 +0.1
4,423,203 - ECD_04152 0.21 -0.5
4,423,238 + ECD_04152 0.29 -0.7
4,423,263 - ECD_04152 0.35 -0.5
4,423,263 - ECD_04152 0.35 +1.0
4,423,361 - ECD_04152 0.59 +0.1
4,423,462 - ECD_04152 0.83 +0.7
4,423,492 - +1.0
4,423,492 - -0.9
4,423,526 + -0.6
4,423,526 + +0.9
4,423,563 - +0.1
4,423,563 - -1.1
4,423,566 + -0.1
4,423,566 + -0.1
4,423,566 + -0.2
4,423,566 + +0.2
4,423,566 + -0.4
4,423,566 + +0.6
4,423,566 + +0.1
4,423,567 - -0.8
4,423,567 - +1.5
4,423,567 - +0.2
4,423,571 - +0.5
4,423,571 - -0.7
4,423,571 - +0.9
4,423,571 - +0.7
4,423,571 - +0.8
4,423,571 - -0.5
4,423,650 + -0.5
4,423,651 - -0.2
4,423,674 + -0.8
4,423,774 + -0.0
4,423,978 + +0.1
4,424,088 + +0.7
4,424,133 - +0.3
4,424,206 + ECD_04153 0.15 -0.7
4,424,260 + ECD_04153 0.23 +0.7
4,424,344 + ECD_04153 0.33 -0.1
4,424,352 + ECD_04153 0.35 +0.0
4,424,353 - ECD_04153 0.35 +1.0
4,424,373 - ECD_04153 0.37 +0.2
4,424,375 + ECD_04153 0.38 +0.2
4,424,497 + ECD_04153 0.53 -0.1
4,424,560 - ECD_04153 0.62 -1.0
4,424,598 - ECD_04153 0.67 -0.7
4,424,598 - ECD_04153 0.67 +0.0
4,424,653 + ECD_04153 0.74 -0.1
4,424,654 - ECD_04153 0.74 -0.5
4,424,654 - ECD_04153 0.74 -0.3
4,424,654 - ECD_04153 0.74 -0.3
4,424,654 - ECD_04153 0.74 -1.1
4,424,678 + ECD_04153 0.77 -1.2
4,424,721 - ECD_04153 0.83 -1.2
4,424,746 + ECD_04153 0.86 +0.0
4,424,800 + +0.6
4,424,801 - +0.6
4,424,801 - -0.1
4,424,801 - +0.2
4,424,805 - +1.0
4,424,805 - +0.0
4,424,805 - -0.5
4,424,944 + +0.1
4,424,944 + -0.2
4,424,944 + -1.6
4,424,945 - +1.0
4,424,945 - -0.0
4,425,046 + ECD_04154 0.20 -0.4
4,425,047 - ECD_04154 0.20 -1.8
4,425,101 - ECD_04154 0.26 +1.3
4,425,120 - ECD_04154 0.28 -0.3
4,425,120 - ECD_04154 0.28 -0.1
4,425,123 - ECD_04154 0.28 -0.2
4,425,288 - ECD_04154 0.45 +0.3
4,425,440 + ECD_04154 0.61 -0.7
4,425,505 + ECD_04154 0.68 -0.4
4,425,512 + ECD_04154 0.69 +0.1
4,425,512 + ECD_04154 0.69 +0.1
4,425,513 - ECD_04154 0.69 -1.7
4,425,674 + ECD_04154 0.86 +0.3
4,425,674 + ECD_04154 0.86 +0.6
4,425,675 - ECD_04154 0.86 +0.3
4,425,678 + ECD_04154 0.86 +0.2
4,425,678 + ECD_04154 0.86 +0.2
4,425,678 + ECD_04154 0.86 -0.3
4,425,678 + ECD_04154 0.86 -0.5
4,425,678 + ECD_04154 0.86 +0.9
4,425,678 + ECD_04154 0.86 -0.1
4,425,678 + ECD_04154 0.86 +0.0
4,425,679 - ECD_04154 0.86 -0.2
4,425,679 - ECD_04154 0.86 +0.1
4,425,679 - ECD_04154 0.86 +0.0
4,425,681 + ECD_04154 0.86 -0.7
4,425,681 + ECD_04154 0.86 -0.4
4,425,681 + ECD_04154 0.86 +0.3
4,425,682 - ECD_04154 0.86 -1.0
4,425,755 + +0.8
4,425,793 + -0.8

Or see this region's nucleotide sequence