Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04152 and ECD_04153 are separated by 556 nucleotides ECD_04153 and ECD_04154 are separated by 0 nucleotides ECD_04154 and ECD_04155 overlap by 4 nucleotides
ECD_04152: ECD_04152 - hypothetical protein, at 4,423,117 to 4,423,530
_04152
ECD_04153: ECD_04153 - ferric citrate ABC transporter ATPase, at 4,424,087 to 4,424,854
_04153
ECD_04154: ECD_04154 - ferric citrate ABC transporter permease, at 4,424,855 to 4,425,811
_04154
ECD_04155: ECD_04155 - ferric citrate ABC transporter permease, at 4,425,808 to 4,426,806
_04155
Position (kb)
4424
4425 Strain fitness (log2 ratio)
-2
-1
0
1 at 4423.089 kb on + strand at 4423.113 kb on + strand at 4423.113 kb on + strand at 4423.115 kb on + strand at 4423.115 kb on + strand at 4423.185 kb on - strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.203 kb on - strand, within ECD_04152 at 4423.238 kb on + strand, within ECD_04152 at 4423.263 kb on - strand, within ECD_04152 at 4423.263 kb on - strand, within ECD_04152 at 4423.361 kb on - strand, within ECD_04152 at 4423.462 kb on - strand, within ECD_04152 at 4423.492 kb on - strand at 4423.492 kb on - strand at 4423.526 kb on + strand at 4423.526 kb on + strand at 4423.563 kb on - strand at 4423.563 kb on - strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.567 kb on - strand at 4423.567 kb on - strand at 4423.567 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.650 kb on + strand at 4423.651 kb on - strand at 4423.674 kb on + strand at 4423.774 kb on + strand at 4423.978 kb on + strand at 4424.088 kb on + strand at 4424.133 kb on - strand at 4424.206 kb on + strand, within ECD_04153 at 4424.260 kb on + strand, within ECD_04153 at 4424.344 kb on + strand, within ECD_04153 at 4424.352 kb on + strand, within ECD_04153 at 4424.353 kb on - strand, within ECD_04153 at 4424.373 kb on - strand, within ECD_04153 at 4424.375 kb on + strand, within ECD_04153 at 4424.497 kb on + strand, within ECD_04153 at 4424.560 kb on - strand, within ECD_04153 at 4424.598 kb on - strand, within ECD_04153 at 4424.598 kb on - strand, within ECD_04153 at 4424.653 kb on + strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.678 kb on + strand, within ECD_04153 at 4424.721 kb on - strand, within ECD_04153 at 4424.746 kb on + strand, within ECD_04153 at 4424.800 kb on + strand at 4424.801 kb on - strand at 4424.801 kb on - strand at 4424.801 kb on - strand at 4424.805 kb on - strand at 4424.805 kb on - strand at 4424.805 kb on - strand at 4424.944 kb on + strand at 4424.944 kb on + strand at 4424.944 kb on + strand at 4424.945 kb on - strand at 4424.945 kb on - strand at 4425.046 kb on + strand, within ECD_04154 at 4425.047 kb on - strand, within ECD_04154 at 4425.101 kb on - strand, within ECD_04154 at 4425.120 kb on - strand, within ECD_04154 at 4425.120 kb on - strand, within ECD_04154 at 4425.123 kb on - strand, within ECD_04154 at 4425.288 kb on - strand, within ECD_04154 at 4425.440 kb on + strand, within ECD_04154 at 4425.505 kb on + strand, within ECD_04154 at 4425.512 kb on + strand, within ECD_04154 at 4425.512 kb on + strand, within ECD_04154 at 4425.513 kb on - strand, within ECD_04154 at 4425.674 kb on + strand, within ECD_04154 at 4425.674 kb on + strand, within ECD_04154 at 4425.675 kb on - strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.682 kb on - strand, within ECD_04154 at 4425.755 kb on + strand at 4425.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 4,423,089 + +0.2 4,423,113 + -0.4 4,423,113 + -0.6 4,423,115 + -0.3 4,423,115 + -0.7 4,423,185 - ECD_04152 0.16 +1.1 4,423,202 + ECD_04152 0.21 +0.4 4,423,202 + ECD_04152 0.21 +1.3 4,423,202 + ECD_04152 0.21 +0.1 4,423,203 - ECD_04152 0.21 -0.5 4,423,238 + ECD_04152 0.29 -0.7 4,423,263 - ECD_04152 0.35 -0.5 4,423,263 - ECD_04152 0.35 +1.0 4,423,361 - ECD_04152 0.59 +0.1 4,423,462 - ECD_04152 0.83 +0.7 4,423,492 - +1.0 4,423,492 - -0.9 4,423,526 + -0.6 4,423,526 + +0.9 4,423,563 - +0.1 4,423,563 - -1.1 4,423,566 + -0.1 4,423,566 + -0.1 4,423,566 + -0.2 4,423,566 + +0.2 4,423,566 + -0.4 4,423,566 + +0.6 4,423,566 + +0.1 4,423,567 - -0.8 4,423,567 - +1.5 4,423,567 - +0.2 4,423,571 - +0.5 4,423,571 - -0.7 4,423,571 - +0.9 4,423,571 - +0.7 4,423,571 - +0.8 4,423,571 - -0.5 4,423,650 + -0.5 4,423,651 - -0.2 4,423,674 + -0.8 4,423,774 + -0.0 4,423,978 + +0.1 4,424,088 + +0.7 4,424,133 - +0.3 4,424,206 + ECD_04153 0.15 -0.7 4,424,260 + ECD_04153 0.23 +0.7 4,424,344 + ECD_04153 0.33 -0.1 4,424,352 + ECD_04153 0.35 +0.0 4,424,353 - ECD_04153 0.35 +1.0 4,424,373 - ECD_04153 0.37 +0.2 4,424,375 + ECD_04153 0.38 +0.2 4,424,497 + ECD_04153 0.53 -0.1 4,424,560 - ECD_04153 0.62 -1.0 4,424,598 - ECD_04153 0.67 -0.7 4,424,598 - ECD_04153 0.67 +0.0 4,424,653 + ECD_04153 0.74 -0.1 4,424,654 - ECD_04153 0.74 -0.5 4,424,654 - ECD_04153 0.74 -0.3 4,424,654 - ECD_04153 0.74 -0.3 4,424,654 - ECD_04153 0.74 -1.1 4,424,678 + ECD_04153 0.77 -1.2 4,424,721 - ECD_04153 0.83 -1.2 4,424,746 + ECD_04153 0.86 +0.0 4,424,800 + +0.6 4,424,801 - +0.6 4,424,801 - -0.1 4,424,801 - +0.2 4,424,805 - +1.0 4,424,805 - +0.0 4,424,805 - -0.5 4,424,944 + +0.1 4,424,944 + -0.2 4,424,944 + -1.6 4,424,945 - +1.0 4,424,945 - -0.0 4,425,046 + ECD_04154 0.20 -0.4 4,425,047 - ECD_04154 0.20 -1.8 4,425,101 - ECD_04154 0.26 +1.3 4,425,120 - ECD_04154 0.28 -0.3 4,425,120 - ECD_04154 0.28 -0.1 4,425,123 - ECD_04154 0.28 -0.2 4,425,288 - ECD_04154 0.45 +0.3 4,425,440 + ECD_04154 0.61 -0.7 4,425,505 + ECD_04154 0.68 -0.4 4,425,512 + ECD_04154 0.69 +0.1 4,425,512 + ECD_04154 0.69 +0.1 4,425,513 - ECD_04154 0.69 -1.7 4,425,674 + ECD_04154 0.86 +0.3 4,425,674 + ECD_04154 0.86 +0.6 4,425,675 - ECD_04154 0.86 +0.3 4,425,678 + ECD_04154 0.86 +0.2 4,425,678 + ECD_04154 0.86 +0.2 4,425,678 + ECD_04154 0.86 -0.3 4,425,678 + ECD_04154 0.86 -0.5 4,425,678 + ECD_04154 0.86 +0.9 4,425,678 + ECD_04154 0.86 -0.1 4,425,678 + ECD_04154 0.86 +0.0 4,425,679 - ECD_04154 0.86 -0.2 4,425,679 - ECD_04154 0.86 +0.1 4,425,679 - ECD_04154 0.86 +0.0 4,425,681 + ECD_04154 0.86 -0.7 4,425,681 + ECD_04154 0.86 -0.4 4,425,681 + ECD_04154 0.86 +0.3 4,425,682 - ECD_04154 0.86 -1.0 4,425,755 + +0.8 4,425,793 + -0.8
Or see this region's nucleotide sequence