Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03548 and ECD_03549 are separated by 174 nucleotides ECD_03549 and ECD_03550 are separated by 45 nucleotides
ECD_03548: ECD_03548 - adenine permease, high affinity; adenine:H+ symporter, at 3,730,822 to 3,732,156
_03548
ECD_03549: ECD_03549 - cryptic adenine deaminase, at 3,732,331 to 3,734,097
_03549
ECD_03550: ECD_03550 - hexose phosphate transporter, at 3,734,143 to 3,735,534
_03550
Position (kb)
3732
3733
3734
3735 Strain fitness (log2 ratio)
-2
-1
0
1 at 3731.338 kb on + strand, within ECD_03548 at 3731.575 kb on - strand, within ECD_03548 at 3731.722 kb on + strand, within ECD_03548 at 3731.914 kb on + strand, within ECD_03548 at 3731.915 kb on - strand, within ECD_03548 at 3732.024 kb on - strand at 3732.226 kb on - strand at 3732.425 kb on - strand at 3732.588 kb on + strand, within ECD_03549 at 3732.766 kb on + strand, within ECD_03549 at 3732.767 kb on - strand, within ECD_03549 at 3732.770 kb on + strand, within ECD_03549 at 3732.770 kb on + strand, within ECD_03549 at 3732.771 kb on - strand, within ECD_03549 at 3732.895 kb on + strand, within ECD_03549 at 3732.991 kb on - strand, within ECD_03549 at 3733.006 kb on + strand, within ECD_03549 at 3733.008 kb on + strand, within ECD_03549 at 3733.009 kb on - strand, within ECD_03549 at 3733.009 kb on - strand, within ECD_03549 at 3733.009 kb on - strand, within ECD_03549 at 3733.011 kb on + strand, within ECD_03549 at 3733.012 kb on - strand, within ECD_03549 at 3733.229 kb on + strand, within ECD_03549 at 3733.331 kb on + strand, within ECD_03549 at 3733.331 kb on + strand, within ECD_03549 at 3733.332 kb on - strand, within ECD_03549 at 3733.380 kb on + strand, within ECD_03549 at 3733.401 kb on - strand, within ECD_03549 at 3733.437 kb on - strand, within ECD_03549 at 3733.480 kb on + strand, within ECD_03549 at 3733.609 kb on + strand, within ECD_03549 at 3733.647 kb on + strand, within ECD_03549 at 3733.647 kb on + strand, within ECD_03549 at 3733.648 kb on - strand, within ECD_03549 at 3733.759 kb on - strand, within ECD_03549 at 3733.761 kb on + strand, within ECD_03549 at 3733.761 kb on + strand, within ECD_03549 at 3733.761 kb on + strand, within ECD_03549 at 3733.762 kb on - strand, within ECD_03549 at 3733.762 kb on - strand, within ECD_03549 at 3733.859 kb on + strand, within ECD_03549 at 3733.859 kb on + strand, within ECD_03549 at 3734.034 kb on - strand at 3734.139 kb on - strand at 3734.139 kb on - strand at 3734.226 kb on + strand at 3734.227 kb on - strand at 3734.227 kb on - strand at 3734.227 kb on - strand at 3734.321 kb on - strand, within ECD_03550 at 3734.348 kb on + strand, within ECD_03550 at 3734.364 kb on + strand, within ECD_03550 at 3734.365 kb on - strand, within ECD_03550 at 3734.368 kb on - strand, within ECD_03550 at 3734.394 kb on + strand, within ECD_03550 at 3734.395 kb on - strand, within ECD_03550 at 3734.398 kb on + strand, within ECD_03550 at 3734.477 kb on + strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.478 kb on - strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.481 kb on + strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.482 kb on - strand, within ECD_03550 at 3734.483 kb on + strand, within ECD_03550 at 3734.483 kb on + strand, within ECD_03550 at 3734.483 kb on + strand, within ECD_03550 at 3734.484 kb on - strand, within ECD_03550 at 3734.484 kb on - strand, within ECD_03550 at 3734.484 kb on - strand, within ECD_03550 at 3734.490 kb on + strand, within ECD_03550 at 3734.504 kb on + strand, within ECD_03550 at 3734.504 kb on + strand, within ECD_03550 at 3734.505 kb on - strand, within ECD_03550 at 3734.505 kb on - strand, within ECD_03550 at 3734.632 kb on - strand, within ECD_03550 at 3734.632 kb on - strand, within ECD_03550 at 3734.709 kb on + strand, within ECD_03550 at 3734.709 kb on + strand, within ECD_03550 at 3734.709 kb on + strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.710 kb on - strand, within ECD_03550 at 3734.714 kb on - strand, within ECD_03550 at 3734.714 kb on - strand, within ECD_03550 at 3734.721 kb on - strand, within ECD_03550 at 3734.721 kb on - strand, within ECD_03550 at 3734.774 kb on + strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.775 kb on - strand, within ECD_03550 at 3734.802 kb on + strand, within ECD_03550 at 3734.808 kb on + strand, within ECD_03550 at 3734.949 kb on + strand, within ECD_03550 at 3734.950 kb on - strand, within ECD_03550 at 3734.982 kb on - strand, within ECD_03550 at 3734.982 kb on - strand, within ECD_03550 at 3734.982 kb on - strand, within ECD_03550 at 3735.040 kb on - strand, within ECD_03550 at 3735.040 kb on - strand, within ECD_03550
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 3,731,338 + ECD_03548 0.39 +0.2 3,731,575 - ECD_03548 0.56 +0.4 3,731,722 + ECD_03548 0.67 +0.1 3,731,914 + ECD_03548 0.82 -0.1 3,731,915 - ECD_03548 0.82 -0.1 3,732,024 - -0.1 3,732,226 - -0.1 3,732,425 - -0.3 3,732,588 + ECD_03549 0.15 -0.9 3,732,766 + ECD_03549 0.25 -1.1 3,732,767 - ECD_03549 0.25 +0.1 3,732,770 + ECD_03549 0.25 -0.3 3,732,770 + ECD_03549 0.25 +0.1 3,732,771 - ECD_03549 0.25 -0.6 3,732,895 + ECD_03549 0.32 -0.2 3,732,991 - ECD_03549 0.37 +0.6 3,733,006 + ECD_03549 0.38 +0.4 3,733,008 + ECD_03549 0.38 -0.1 3,733,009 - ECD_03549 0.38 +0.1 3,733,009 - ECD_03549 0.38 -0.7 3,733,009 - ECD_03549 0.38 -1.4 3,733,011 + ECD_03549 0.38 -0.3 3,733,012 - ECD_03549 0.39 -0.2 3,733,229 + ECD_03549 0.51 -0.2 3,733,331 + ECD_03549 0.57 -2.0 3,733,331 + ECD_03549 0.57 -1.5 3,733,332 - ECD_03549 0.57 -0.2 3,733,380 + ECD_03549 0.59 +0.0 3,733,401 - ECD_03549 0.61 -0.1 3,733,437 - ECD_03549 0.63 +0.1 3,733,480 + ECD_03549 0.65 +0.5 3,733,609 + ECD_03549 0.72 -0.2 3,733,647 + ECD_03549 0.74 +0.7 3,733,647 + ECD_03549 0.74 -0.1 3,733,648 - ECD_03549 0.75 +1.3 3,733,759 - ECD_03549 0.81 +0.6 3,733,761 + ECD_03549 0.81 -0.4 3,733,761 + ECD_03549 0.81 -0.4 3,733,761 + ECD_03549 0.81 -0.1 3,733,762 - ECD_03549 0.81 -0.4 3,733,762 - ECD_03549 0.81 -0.1 3,733,859 + ECD_03549 0.86 -0.4 3,733,859 + ECD_03549 0.86 -0.8 3,734,034 - -2.4 3,734,139 - -1.4 3,734,139 - -0.4 3,734,226 + -0.6 3,734,227 - +0.4 3,734,227 - -0.4 3,734,227 - -0.3 3,734,321 - ECD_03550 0.13 +0.2 3,734,348 + ECD_03550 0.15 +0.1 3,734,364 + ECD_03550 0.16 +0.2 3,734,365 - ECD_03550 0.16 -0.6 3,734,368 - ECD_03550 0.16 -1.3 3,734,394 + ECD_03550 0.18 -0.2 3,734,395 - ECD_03550 0.18 -0.6 3,734,398 + ECD_03550 0.18 -0.0 3,734,477 + ECD_03550 0.24 -0.4 3,734,478 - ECD_03550 0.24 -0.2 3,734,478 - ECD_03550 0.24 +0.1 3,734,478 - ECD_03550 0.24 -0.2 3,734,478 - ECD_03550 0.24 -0.0 3,734,478 - ECD_03550 0.24 -0.7 3,734,481 + ECD_03550 0.24 -0.5 3,734,481 + ECD_03550 0.24 +0.5 3,734,481 + ECD_03550 0.24 +0.4 3,734,481 + ECD_03550 0.24 -0.1 3,734,481 + ECD_03550 0.24 +0.2 3,734,482 - ECD_03550 0.24 -0.5 3,734,482 - ECD_03550 0.24 +0.5 3,734,482 - ECD_03550 0.24 -1.1 3,734,482 - ECD_03550 0.24 -1.3 3,734,482 - ECD_03550 0.24 -0.2 3,734,483 + ECD_03550 0.24 -0.7 3,734,483 + ECD_03550 0.24 +0.8 3,734,483 + ECD_03550 0.24 +0.2 3,734,484 - ECD_03550 0.24 +0.2 3,734,484 - ECD_03550 0.24 -1.1 3,734,484 - ECD_03550 0.24 -1.2 3,734,490 + ECD_03550 0.25 -0.9 3,734,504 + ECD_03550 0.26 +1.6 3,734,504 + ECD_03550 0.26 -0.1 3,734,505 - ECD_03550 0.26 +0.3 3,734,505 - ECD_03550 0.26 +0.2 3,734,632 - ECD_03550 0.35 -0.7 3,734,632 - ECD_03550 0.35 +1.0 3,734,709 + ECD_03550 0.41 -0.3 3,734,709 + ECD_03550 0.41 -0.5 3,734,709 + ECD_03550 0.41 -0.7 3,734,710 - ECD_03550 0.41 -0.8 3,734,710 - ECD_03550 0.41 +0.4 3,734,710 - ECD_03550 0.41 -0.1 3,734,710 - ECD_03550 0.41 +0.4 3,734,714 - ECD_03550 0.41 -0.1 3,734,714 - ECD_03550 0.41 +0.5 3,734,721 - ECD_03550 0.42 -0.1 3,734,721 - ECD_03550 0.42 +0.1 3,734,774 + ECD_03550 0.45 +0.2 3,734,775 - ECD_03550 0.45 +0.4 3,734,775 - ECD_03550 0.45 -0.4 3,734,775 - ECD_03550 0.45 +0.4 3,734,775 - ECD_03550 0.45 -0.6 3,734,775 - ECD_03550 0.45 -0.8 3,734,802 + ECD_03550 0.47 -0.3 3,734,808 + ECD_03550 0.48 -1.0 3,734,949 + ECD_03550 0.58 +1.1 3,734,950 - ECD_03550 0.58 +0.5 3,734,982 - ECD_03550 0.60 -0.1 3,734,982 - ECD_03550 0.60 +0.6 3,734,982 - ECD_03550 0.60 +0.5 3,735,040 - ECD_03550 0.64 -0.0 3,735,040 - ECD_03550 0.64 +0.6
Or see this region's nucleotide sequence