Strain Fitness in Escherichia coli BL21 around ECD_03549

Experiment: Bas34

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03548 and ECD_03549 are separated by 174 nucleotidesECD_03549 and ECD_03550 are separated by 45 nucleotides ECD_03548: ECD_03548 - adenine permease, high affinity; adenine:H+ symporter, at 3,730,822 to 3,732,156 _03548 ECD_03549: ECD_03549 - cryptic adenine deaminase, at 3,732,331 to 3,734,097 _03549 ECD_03550: ECD_03550 - hexose phosphate transporter, at 3,734,143 to 3,735,534 _03550 Position (kb) 3732 3733 3734 3735Strain fitness (log2 ratio) -2 -1 0 1at 3731.338 kb on + strand, within ECD_03548at 3731.575 kb on - strand, within ECD_03548at 3731.722 kb on + strand, within ECD_03548at 3731.914 kb on + strand, within ECD_03548at 3731.915 kb on - strand, within ECD_03548at 3732.024 kb on - strandat 3732.226 kb on - strandat 3732.425 kb on - strandat 3732.588 kb on + strand, within ECD_03549at 3732.766 kb on + strand, within ECD_03549at 3732.767 kb on - strand, within ECD_03549at 3732.770 kb on + strand, within ECD_03549at 3732.770 kb on + strand, within ECD_03549at 3732.771 kb on - strand, within ECD_03549at 3732.895 kb on + strand, within ECD_03549at 3732.991 kb on - strand, within ECD_03549at 3733.006 kb on + strand, within ECD_03549at 3733.008 kb on + strand, within ECD_03549at 3733.009 kb on - strand, within ECD_03549at 3733.009 kb on - strand, within ECD_03549at 3733.009 kb on - strand, within ECD_03549at 3733.011 kb on + strand, within ECD_03549at 3733.012 kb on - strand, within ECD_03549at 3733.229 kb on + strand, within ECD_03549at 3733.331 kb on + strand, within ECD_03549at 3733.331 kb on + strand, within ECD_03549at 3733.332 kb on - strand, within ECD_03549at 3733.380 kb on + strand, within ECD_03549at 3733.401 kb on - strand, within ECD_03549at 3733.437 kb on - strand, within ECD_03549at 3733.480 kb on + strand, within ECD_03549at 3733.609 kb on + strand, within ECD_03549at 3733.647 kb on + strand, within ECD_03549at 3733.647 kb on + strand, within ECD_03549at 3733.648 kb on - strand, within ECD_03549at 3733.759 kb on - strand, within ECD_03549at 3733.761 kb on + strand, within ECD_03549at 3733.761 kb on + strand, within ECD_03549at 3733.761 kb on + strand, within ECD_03549at 3733.762 kb on - strand, within ECD_03549at 3733.762 kb on - strand, within ECD_03549at 3733.859 kb on + strand, within ECD_03549at 3733.859 kb on + strand, within ECD_03549at 3734.034 kb on - strandat 3734.139 kb on - strandat 3734.139 kb on - strandat 3734.226 kb on + strandat 3734.227 kb on - strandat 3734.227 kb on - strandat 3734.227 kb on - strandat 3734.321 kb on - strand, within ECD_03550at 3734.348 kb on + strand, within ECD_03550at 3734.364 kb on + strand, within ECD_03550at 3734.365 kb on - strand, within ECD_03550at 3734.368 kb on - strand, within ECD_03550at 3734.394 kb on + strand, within ECD_03550at 3734.395 kb on - strand, within ECD_03550at 3734.398 kb on + strand, within ECD_03550at 3734.477 kb on + strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.478 kb on - strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.481 kb on + strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.482 kb on - strand, within ECD_03550at 3734.483 kb on + strand, within ECD_03550at 3734.483 kb on + strand, within ECD_03550at 3734.483 kb on + strand, within ECD_03550at 3734.484 kb on - strand, within ECD_03550at 3734.484 kb on - strand, within ECD_03550at 3734.484 kb on - strand, within ECD_03550at 3734.490 kb on + strand, within ECD_03550at 3734.504 kb on + strand, within ECD_03550at 3734.504 kb on + strand, within ECD_03550at 3734.505 kb on - strand, within ECD_03550at 3734.505 kb on - strand, within ECD_03550at 3734.632 kb on - strand, within ECD_03550at 3734.632 kb on - strand, within ECD_03550at 3734.709 kb on + strand, within ECD_03550at 3734.709 kb on + strand, within ECD_03550at 3734.709 kb on + strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.710 kb on - strand, within ECD_03550at 3734.714 kb on - strand, within ECD_03550at 3734.714 kb on - strand, within ECD_03550at 3734.721 kb on - strand, within ECD_03550at 3734.721 kb on - strand, within ECD_03550at 3734.774 kb on + strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.775 kb on - strand, within ECD_03550at 3734.802 kb on + strand, within ECD_03550at 3734.808 kb on + strand, within ECD_03550at 3734.949 kb on + strand, within ECD_03550at 3734.950 kb on - strand, within ECD_03550at 3734.982 kb on - strand, within ECD_03550at 3734.982 kb on - strand, within ECD_03550at 3734.982 kb on - strand, within ECD_03550at 3735.040 kb on - strand, within ECD_03550at 3735.040 kb on - strand, within ECD_03550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
remove
3,731,338 + ECD_03548 0.39 +0.2
3,731,575 - ECD_03548 0.56 +0.4
3,731,722 + ECD_03548 0.67 +0.1
3,731,914 + ECD_03548 0.82 -0.1
3,731,915 - ECD_03548 0.82 -0.1
3,732,024 - -0.1
3,732,226 - -0.1
3,732,425 - -0.3
3,732,588 + ECD_03549 0.15 -0.9
3,732,766 + ECD_03549 0.25 -1.1
3,732,767 - ECD_03549 0.25 +0.1
3,732,770 + ECD_03549 0.25 -0.3
3,732,770 + ECD_03549 0.25 +0.1
3,732,771 - ECD_03549 0.25 -0.6
3,732,895 + ECD_03549 0.32 -0.2
3,732,991 - ECD_03549 0.37 +0.6
3,733,006 + ECD_03549 0.38 +0.4
3,733,008 + ECD_03549 0.38 -0.1
3,733,009 - ECD_03549 0.38 +0.1
3,733,009 - ECD_03549 0.38 -0.7
3,733,009 - ECD_03549 0.38 -1.4
3,733,011 + ECD_03549 0.38 -0.3
3,733,012 - ECD_03549 0.39 -0.2
3,733,229 + ECD_03549 0.51 -0.2
3,733,331 + ECD_03549 0.57 -2.0
3,733,331 + ECD_03549 0.57 -1.5
3,733,332 - ECD_03549 0.57 -0.2
3,733,380 + ECD_03549 0.59 +0.0
3,733,401 - ECD_03549 0.61 -0.1
3,733,437 - ECD_03549 0.63 +0.1
3,733,480 + ECD_03549 0.65 +0.5
3,733,609 + ECD_03549 0.72 -0.2
3,733,647 + ECD_03549 0.74 +0.7
3,733,647 + ECD_03549 0.74 -0.1
3,733,648 - ECD_03549 0.75 +1.3
3,733,759 - ECD_03549 0.81 +0.6
3,733,761 + ECD_03549 0.81 -0.4
3,733,761 + ECD_03549 0.81 -0.4
3,733,761 + ECD_03549 0.81 -0.1
3,733,762 - ECD_03549 0.81 -0.4
3,733,762 - ECD_03549 0.81 -0.1
3,733,859 + ECD_03549 0.86 -0.4
3,733,859 + ECD_03549 0.86 -0.8
3,734,034 - -2.4
3,734,139 - -1.4
3,734,139 - -0.4
3,734,226 + -0.6
3,734,227 - +0.4
3,734,227 - -0.4
3,734,227 - -0.3
3,734,321 - ECD_03550 0.13 +0.2
3,734,348 + ECD_03550 0.15 +0.1
3,734,364 + ECD_03550 0.16 +0.2
3,734,365 - ECD_03550 0.16 -0.6
3,734,368 - ECD_03550 0.16 -1.3
3,734,394 + ECD_03550 0.18 -0.2
3,734,395 - ECD_03550 0.18 -0.6
3,734,398 + ECD_03550 0.18 -0.0
3,734,477 + ECD_03550 0.24 -0.4
3,734,478 - ECD_03550 0.24 -0.2
3,734,478 - ECD_03550 0.24 +0.1
3,734,478 - ECD_03550 0.24 -0.2
3,734,478 - ECD_03550 0.24 -0.0
3,734,478 - ECD_03550 0.24 -0.7
3,734,481 + ECD_03550 0.24 -0.5
3,734,481 + ECD_03550 0.24 +0.5
3,734,481 + ECD_03550 0.24 +0.4
3,734,481 + ECD_03550 0.24 -0.1
3,734,481 + ECD_03550 0.24 +0.2
3,734,482 - ECD_03550 0.24 -0.5
3,734,482 - ECD_03550 0.24 +0.5
3,734,482 - ECD_03550 0.24 -1.1
3,734,482 - ECD_03550 0.24 -1.3
3,734,482 - ECD_03550 0.24 -0.2
3,734,483 + ECD_03550 0.24 -0.7
3,734,483 + ECD_03550 0.24 +0.8
3,734,483 + ECD_03550 0.24 +0.2
3,734,484 - ECD_03550 0.24 +0.2
3,734,484 - ECD_03550 0.24 -1.1
3,734,484 - ECD_03550 0.24 -1.2
3,734,490 + ECD_03550 0.25 -0.9
3,734,504 + ECD_03550 0.26 +1.6
3,734,504 + ECD_03550 0.26 -0.1
3,734,505 - ECD_03550 0.26 +0.3
3,734,505 - ECD_03550 0.26 +0.2
3,734,632 - ECD_03550 0.35 -0.7
3,734,632 - ECD_03550 0.35 +1.0
3,734,709 + ECD_03550 0.41 -0.3
3,734,709 + ECD_03550 0.41 -0.5
3,734,709 + ECD_03550 0.41 -0.7
3,734,710 - ECD_03550 0.41 -0.8
3,734,710 - ECD_03550 0.41 +0.4
3,734,710 - ECD_03550 0.41 -0.1
3,734,710 - ECD_03550 0.41 +0.4
3,734,714 - ECD_03550 0.41 -0.1
3,734,714 - ECD_03550 0.41 +0.5
3,734,721 - ECD_03550 0.42 -0.1
3,734,721 - ECD_03550 0.42 +0.1
3,734,774 + ECD_03550 0.45 +0.2
3,734,775 - ECD_03550 0.45 +0.4
3,734,775 - ECD_03550 0.45 -0.4
3,734,775 - ECD_03550 0.45 +0.4
3,734,775 - ECD_03550 0.45 -0.6
3,734,775 - ECD_03550 0.45 -0.8
3,734,802 + ECD_03550 0.47 -0.3
3,734,808 + ECD_03550 0.48 -1.0
3,734,949 + ECD_03550 0.58 +1.1
3,734,950 - ECD_03550 0.58 +0.5
3,734,982 - ECD_03550 0.60 -0.1
3,734,982 - ECD_03550 0.60 +0.6
3,734,982 - ECD_03550 0.60 +0.5
3,735,040 - ECD_03550 0.64 -0.0
3,735,040 - ECD_03550 0.64 +0.6

Or see this region's nucleotide sequence