Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03461 and ECD_03462 overlap by 1 nucleotides ECD_03462 and ECD_03463 overlap by 4 nucleotides
ECD_03461: ECD_03461 - L-lactate permease, at 3,646,644 to 3,648,299
_03461
ECD_03462: ECD_03462 - dual role activator/repressor for lldPRD operon, at 3,648,299 to 3,649,075
_03462
ECD_03463: ECD_03463 - L-lactate dehydrogenase, FMN-linked, at 3,649,072 to 3,650,262
_03463
Position (kb)
3648
3649
3650 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3647.359 kb on - strand, within ECD_03461 at 3647.363 kb on + strand, within ECD_03461 at 3647.363 kb on + strand, within ECD_03461 at 3647.364 kb on - strand, within ECD_03461 at 3647.364 kb on - strand, within ECD_03461 at 3647.364 kb on - strand, within ECD_03461 at 3647.364 kb on - strand, within ECD_03461 at 3647.399 kb on + strand, within ECD_03461 at 3647.501 kb on + strand, within ECD_03461 at 3647.524 kb on - strand, within ECD_03461 at 3647.542 kb on + strand, within ECD_03461 at 3647.581 kb on + strand, within ECD_03461 at 3647.637 kb on + strand, within ECD_03461 at 3647.637 kb on + strand, within ECD_03461 at 3647.638 kb on - strand, within ECD_03461 at 3647.721 kb on + strand, within ECD_03461 at 3647.735 kb on + strand, within ECD_03461 at 3647.826 kb on - strand, within ECD_03461 at 3647.871 kb on + strand, within ECD_03461 at 3647.872 kb on - strand, within ECD_03461 at 3647.872 kb on - strand, within ECD_03461 at 3648.110 kb on + strand, within ECD_03461 at 3648.110 kb on + strand, within ECD_03461 at 3648.111 kb on - strand, within ECD_03461 at 3648.212 kb on + strand at 3648.242 kb on + strand at 3648.242 kb on + strand at 3648.243 kb on - strand at 3648.243 kb on - strand at 3648.243 kb on - strand at 3648.273 kb on + strand at 3648.273 kb on + strand at 3648.280 kb on + strand at 3648.281 kb on - strand at 3648.297 kb on + strand at 3648.705 kb on + strand, within ECD_03462 at 3648.705 kb on + strand, within ECD_03462 at 3648.776 kb on - strand, within ECD_03462 at 3648.776 kb on - strand, within ECD_03462 at 3648.776 kb on - strand, within ECD_03462 at 3648.776 kb on - strand, within ECD_03462 at 3648.839 kb on - strand, within ECD_03462 at 3648.839 kb on - strand, within ECD_03462 at 3648.854 kb on + strand, within ECD_03462 at 3648.854 kb on + strand, within ECD_03462 at 3648.855 kb on - strand, within ECD_03462 at 3648.855 kb on - strand, within ECD_03462 at 3648.855 kb on - strand, within ECD_03462 at 3648.965 kb on - strand, within ECD_03462 at 3649.024 kb on + strand at 3649.045 kb on + strand at 3649.045 kb on + strand at 3649.077 kb on + strand at 3649.077 kb on + strand at 3649.078 kb on - strand at 3649.141 kb on + strand at 3649.142 kb on - strand at 3649.142 kb on - strand at 3649.142 kb on - strand at 3649.142 kb on - strand at 3649.142 kb on - strand at 3649.143 kb on + strand at 3649.143 kb on + strand at 3649.143 kb on + strand at 3649.143 kb on + strand at 3649.144 kb on - strand at 3649.159 kb on + strand at 3649.159 kb on + strand at 3649.160 kb on - strand at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.321 kb on + strand, within ECD_03463 at 3649.322 kb on - strand, within ECD_03463 at 3649.322 kb on - strand, within ECD_03463 at 3649.322 kb on - strand, within ECD_03463 at 3649.322 kb on - strand, within ECD_03463 at 3649.322 kb on - strand, within ECD_03463 at 3649.372 kb on - strand, within ECD_03463 at 3649.456 kb on + strand, within ECD_03463 at 3649.456 kb on + strand, within ECD_03463 at 3649.456 kb on + strand, within ECD_03463 at 3649.456 kb on + strand, within ECD_03463 at 3649.457 kb on - strand, within ECD_03463 at 3649.461 kb on - strand, within ECD_03463 at 3649.461 kb on - strand, within ECD_03463 at 3649.542 kb on + strand, within ECD_03463 at 3649.584 kb on + strand, within ECD_03463 at 3649.585 kb on - strand, within ECD_03463 at 3649.615 kb on + strand, within ECD_03463 at 3649.682 kb on + strand, within ECD_03463 at 3649.682 kb on + strand, within ECD_03463 at 3649.686 kb on + strand, within ECD_03463 at 3649.687 kb on - strand, within ECD_03463 at 3649.687 kb on - strand, within ECD_03463 at 3649.689 kb on + strand, within ECD_03463 at 3649.689 kb on + strand, within ECD_03463 at 3649.729 kb on + strand, within ECD_03463 at 3649.729 kb on + strand, within ECD_03463 at 3649.729 kb on + strand, within ECD_03463 at 3649.730 kb on - strand, within ECD_03463 at 3649.730 kb on - strand, within ECD_03463 at 3649.750 kb on - strand, within ECD_03463 at 3649.891 kb on - strand, within ECD_03463 at 3649.948 kb on - strand, within ECD_03463 at 3649.948 kb on - strand, within ECD_03463 at 3649.948 kb on - strand, within ECD_03463 at 3649.971 kb on + strand, within ECD_03463 at 3649.973 kb on + strand, within ECD_03463 at 3649.974 kb on - strand, within ECD_03463 at 3650.022 kb on + strand, within ECD_03463 at 3650.048 kb on + strand, within ECD_03463 at 3650.049 kb on - strand, within ECD_03463 at 3650.071 kb on + strand, within ECD_03463
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 3,647,359 - ECD_03461 0.43 +0.5 3,647,363 + ECD_03461 0.43 +0.4 3,647,363 + ECD_03461 0.43 +0.2 3,647,364 - ECD_03461 0.43 -1.1 3,647,364 - ECD_03461 0.43 -0.2 3,647,364 - ECD_03461 0.43 +0.1 3,647,364 - ECD_03461 0.43 -1.5 3,647,399 + ECD_03461 0.46 -0.8 3,647,501 + ECD_03461 0.52 -0.5 3,647,524 - ECD_03461 0.53 -0.3 3,647,542 + ECD_03461 0.54 -0.3 3,647,581 + ECD_03461 0.57 -0.3 3,647,637 + ECD_03461 0.60 +0.2 3,647,637 + ECD_03461 0.60 +0.8 3,647,638 - ECD_03461 0.60 -0.1 3,647,721 + ECD_03461 0.65 +0.1 3,647,735 + ECD_03461 0.66 +1.4 3,647,826 - ECD_03461 0.71 +0.7 3,647,871 + ECD_03461 0.74 +0.7 3,647,872 - ECD_03461 0.74 -0.7 3,647,872 - ECD_03461 0.74 +0.5 3,648,110 + ECD_03461 0.89 -0.6 3,648,110 + ECD_03461 0.89 -1.5 3,648,111 - ECD_03461 0.89 +0.5 3,648,212 + -0.6 3,648,242 + -0.1 3,648,242 + +0.1 3,648,243 - +0.2 3,648,243 - -1.5 3,648,243 - +0.3 3,648,273 + +0.0 3,648,273 + +1.7 3,648,280 + -0.8 3,648,281 - -0.5 3,648,297 + +0.1 3,648,705 + ECD_03462 0.52 -0.8 3,648,705 + ECD_03462 0.52 +0.2 3,648,776 - ECD_03462 0.61 +0.5 3,648,776 - ECD_03462 0.61 -0.5 3,648,776 - ECD_03462 0.61 +0.8 3,648,776 - ECD_03462 0.61 -0.9 3,648,839 - ECD_03462 0.69 -3.3 3,648,839 - ECD_03462 0.69 -0.5 3,648,854 + ECD_03462 0.71 -0.5 3,648,854 + ECD_03462 0.71 -0.0 3,648,855 - ECD_03462 0.72 +1.0 3,648,855 - ECD_03462 0.72 -0.2 3,648,855 - ECD_03462 0.72 -0.8 3,648,965 - ECD_03462 0.86 -0.9 3,649,024 + -0.2 3,649,045 + +0.4 3,649,045 + -0.9 3,649,077 + +0.3 3,649,077 + +0.2 3,649,078 - -0.2 3,649,141 + +0.3 3,649,142 - -0.4 3,649,142 - +0.3 3,649,142 - +0.3 3,649,142 - +0.4 3,649,142 - +0.2 3,649,143 + -0.3 3,649,143 + -0.2 3,649,143 + +0.6 3,649,143 + -1.1 3,649,144 - +0.7 3,649,159 + -0.4 3,649,159 + -0.1 3,649,160 - -1.9 3,649,321 + ECD_03463 0.21 +0.3 3,649,321 + ECD_03463 0.21 -0.5 3,649,321 + ECD_03463 0.21 +0.7 3,649,321 + ECD_03463 0.21 -0.9 3,649,321 + ECD_03463 0.21 -0.7 3,649,321 + ECD_03463 0.21 +0.5 3,649,321 + ECD_03463 0.21 +0.1 3,649,321 + ECD_03463 0.21 -0.3 3,649,321 + ECD_03463 0.21 -0.5 3,649,322 - ECD_03463 0.21 -0.6 3,649,322 - ECD_03463 0.21 -0.3 3,649,322 - ECD_03463 0.21 -0.7 3,649,322 - ECD_03463 0.21 +0.2 3,649,322 - ECD_03463 0.21 +0.1 3,649,372 - ECD_03463 0.25 -0.4 3,649,456 + ECD_03463 0.32 +0.1 3,649,456 + ECD_03463 0.32 +0.8 3,649,456 + ECD_03463 0.32 -0.8 3,649,456 + ECD_03463 0.32 +0.3 3,649,457 - ECD_03463 0.32 +0.4 3,649,461 - ECD_03463 0.33 -0.2 3,649,461 - ECD_03463 0.33 -0.6 3,649,542 + ECD_03463 0.39 -0.4 3,649,584 + ECD_03463 0.43 -0.2 3,649,585 - ECD_03463 0.43 -0.4 3,649,615 + ECD_03463 0.46 -0.2 3,649,682 + ECD_03463 0.51 -0.3 3,649,682 + ECD_03463 0.51 -0.5 3,649,686 + ECD_03463 0.52 -1.5 3,649,687 - ECD_03463 0.52 -0.1 3,649,687 - ECD_03463 0.52 -1.3 3,649,689 + ECD_03463 0.52 -0.1 3,649,689 + ECD_03463 0.52 +0.2 3,649,729 + ECD_03463 0.55 -1.0 3,649,729 + ECD_03463 0.55 -0.3 3,649,729 + ECD_03463 0.55 +0.7 3,649,730 - ECD_03463 0.55 -1.4 3,649,730 - ECD_03463 0.55 -1.0 3,649,750 - ECD_03463 0.57 +1.0 3,649,891 - ECD_03463 0.69 -0.8 3,649,948 - ECD_03463 0.74 -0.7 3,649,948 - ECD_03463 0.74 -1.1 3,649,948 - ECD_03463 0.74 -0.2 3,649,971 + ECD_03463 0.75 -0.7 3,649,973 + ECD_03463 0.76 -1.0 3,649,974 - ECD_03463 0.76 +0.0 3,650,022 + ECD_03463 0.80 -1.4 3,650,048 + ECD_03463 0.82 +0.9 3,650,049 - ECD_03463 0.82 -0.5 3,650,071 + ECD_03463 0.84 +0.5
Or see this region's nucleotide sequence