Strain Fitness in Escherichia coli BL21 around ECD_03462

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03461 and ECD_03462 overlap by 1 nucleotidesECD_03462 and ECD_03463 overlap by 4 nucleotides ECD_03461: ECD_03461 - L-lactate permease, at 3,646,644 to 3,648,299 _03461 ECD_03462: ECD_03462 - dual role activator/repressor for lldPRD operon, at 3,648,299 to 3,649,075 _03462 ECD_03463: ECD_03463 - L-lactate dehydrogenase, FMN-linked, at 3,649,072 to 3,650,262 _03463 Position (kb) 3648 3649 3650Strain fitness (log2 ratio) -3 -2 -1 0 1at 3647.359 kb on - strand, within ECD_03461at 3647.363 kb on + strand, within ECD_03461at 3647.363 kb on + strand, within ECD_03461at 3647.364 kb on - strand, within ECD_03461at 3647.364 kb on - strand, within ECD_03461at 3647.364 kb on - strand, within ECD_03461at 3647.364 kb on - strand, within ECD_03461at 3647.399 kb on + strand, within ECD_03461at 3647.501 kb on + strand, within ECD_03461at 3647.524 kb on - strand, within ECD_03461at 3647.542 kb on + strand, within ECD_03461at 3647.581 kb on + strand, within ECD_03461at 3647.637 kb on + strand, within ECD_03461at 3647.637 kb on + strand, within ECD_03461at 3647.638 kb on - strand, within ECD_03461at 3647.721 kb on + strand, within ECD_03461at 3647.735 kb on + strand, within ECD_03461at 3647.826 kb on - strand, within ECD_03461at 3647.871 kb on + strand, within ECD_03461at 3647.872 kb on - strand, within ECD_03461at 3647.872 kb on - strand, within ECD_03461at 3648.110 kb on + strand, within ECD_03461at 3648.110 kb on + strand, within ECD_03461at 3648.111 kb on - strand, within ECD_03461at 3648.212 kb on + strandat 3648.242 kb on + strandat 3648.242 kb on + strandat 3648.243 kb on - strandat 3648.243 kb on - strandat 3648.243 kb on - strandat 3648.273 kb on + strandat 3648.273 kb on + strandat 3648.280 kb on + strandat 3648.281 kb on - strandat 3648.297 kb on + strandat 3648.705 kb on + strand, within ECD_03462at 3648.705 kb on + strand, within ECD_03462at 3648.776 kb on - strand, within ECD_03462at 3648.776 kb on - strand, within ECD_03462at 3648.776 kb on - strand, within ECD_03462at 3648.776 kb on - strand, within ECD_03462at 3648.839 kb on - strand, within ECD_03462at 3648.839 kb on - strand, within ECD_03462at 3648.854 kb on + strand, within ECD_03462at 3648.854 kb on + strand, within ECD_03462at 3648.855 kb on - strand, within ECD_03462at 3648.855 kb on - strand, within ECD_03462at 3648.855 kb on - strand, within ECD_03462at 3648.965 kb on - strand, within ECD_03462at 3649.024 kb on + strandat 3649.045 kb on + strandat 3649.045 kb on + strandat 3649.077 kb on + strandat 3649.077 kb on + strandat 3649.078 kb on - strandat 3649.141 kb on + strandat 3649.142 kb on - strandat 3649.142 kb on - strandat 3649.142 kb on - strandat 3649.142 kb on - strandat 3649.142 kb on - strandat 3649.143 kb on + strandat 3649.143 kb on + strandat 3649.143 kb on + strandat 3649.143 kb on + strandat 3649.144 kb on - strandat 3649.159 kb on + strandat 3649.159 kb on + strandat 3649.160 kb on - strandat 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.321 kb on + strand, within ECD_03463at 3649.322 kb on - strand, within ECD_03463at 3649.322 kb on - strand, within ECD_03463at 3649.322 kb on - strand, within ECD_03463at 3649.322 kb on - strand, within ECD_03463at 3649.322 kb on - strand, within ECD_03463at 3649.372 kb on - strand, within ECD_03463at 3649.456 kb on + strand, within ECD_03463at 3649.456 kb on + strand, within ECD_03463at 3649.456 kb on + strand, within ECD_03463at 3649.456 kb on + strand, within ECD_03463at 3649.457 kb on - strand, within ECD_03463at 3649.461 kb on - strand, within ECD_03463at 3649.461 kb on - strand, within ECD_03463at 3649.542 kb on + strand, within ECD_03463at 3649.584 kb on + strand, within ECD_03463at 3649.585 kb on - strand, within ECD_03463at 3649.615 kb on + strand, within ECD_03463at 3649.682 kb on + strand, within ECD_03463at 3649.682 kb on + strand, within ECD_03463at 3649.686 kb on + strand, within ECD_03463at 3649.687 kb on - strand, within ECD_03463at 3649.687 kb on - strand, within ECD_03463at 3649.689 kb on + strand, within ECD_03463at 3649.689 kb on + strand, within ECD_03463at 3649.729 kb on + strand, within ECD_03463at 3649.729 kb on + strand, within ECD_03463at 3649.729 kb on + strand, within ECD_03463at 3649.730 kb on - strand, within ECD_03463at 3649.730 kb on - strand, within ECD_03463at 3649.750 kb on - strand, within ECD_03463at 3649.891 kb on - strand, within ECD_03463at 3649.948 kb on - strand, within ECD_03463at 3649.948 kb on - strand, within ECD_03463at 3649.948 kb on - strand, within ECD_03463at 3649.971 kb on + strand, within ECD_03463at 3649.973 kb on + strand, within ECD_03463at 3649.974 kb on - strand, within ECD_03463at 3650.022 kb on + strand, within ECD_03463at 3650.048 kb on + strand, within ECD_03463at 3650.049 kb on - strand, within ECD_03463at 3650.071 kb on + strand, within ECD_03463

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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3,647,359 - ECD_03461 0.43 +0.5
3,647,363 + ECD_03461 0.43 +0.4
3,647,363 + ECD_03461 0.43 +0.2
3,647,364 - ECD_03461 0.43 -1.1
3,647,364 - ECD_03461 0.43 -0.2
3,647,364 - ECD_03461 0.43 +0.1
3,647,364 - ECD_03461 0.43 -1.5
3,647,399 + ECD_03461 0.46 -0.8
3,647,501 + ECD_03461 0.52 -0.5
3,647,524 - ECD_03461 0.53 -0.3
3,647,542 + ECD_03461 0.54 -0.3
3,647,581 + ECD_03461 0.57 -0.3
3,647,637 + ECD_03461 0.60 +0.2
3,647,637 + ECD_03461 0.60 +0.8
3,647,638 - ECD_03461 0.60 -0.1
3,647,721 + ECD_03461 0.65 +0.1
3,647,735 + ECD_03461 0.66 +1.4
3,647,826 - ECD_03461 0.71 +0.7
3,647,871 + ECD_03461 0.74 +0.7
3,647,872 - ECD_03461 0.74 -0.7
3,647,872 - ECD_03461 0.74 +0.5
3,648,110 + ECD_03461 0.89 -0.6
3,648,110 + ECD_03461 0.89 -1.5
3,648,111 - ECD_03461 0.89 +0.5
3,648,212 + -0.6
3,648,242 + -0.1
3,648,242 + +0.1
3,648,243 - +0.2
3,648,243 - -1.5
3,648,243 - +0.3
3,648,273 + +0.0
3,648,273 + +1.7
3,648,280 + -0.8
3,648,281 - -0.5
3,648,297 + +0.1
3,648,705 + ECD_03462 0.52 -0.8
3,648,705 + ECD_03462 0.52 +0.2
3,648,776 - ECD_03462 0.61 +0.5
3,648,776 - ECD_03462 0.61 -0.5
3,648,776 - ECD_03462 0.61 +0.8
3,648,776 - ECD_03462 0.61 -0.9
3,648,839 - ECD_03462 0.69 -3.3
3,648,839 - ECD_03462 0.69 -0.5
3,648,854 + ECD_03462 0.71 -0.5
3,648,854 + ECD_03462 0.71 -0.0
3,648,855 - ECD_03462 0.72 +1.0
3,648,855 - ECD_03462 0.72 -0.2
3,648,855 - ECD_03462 0.72 -0.8
3,648,965 - ECD_03462 0.86 -0.9
3,649,024 + -0.2
3,649,045 + +0.4
3,649,045 + -0.9
3,649,077 + +0.3
3,649,077 + +0.2
3,649,078 - -0.2
3,649,141 + +0.3
3,649,142 - -0.4
3,649,142 - +0.3
3,649,142 - +0.3
3,649,142 - +0.4
3,649,142 - +0.2
3,649,143 + -0.3
3,649,143 + -0.2
3,649,143 + +0.6
3,649,143 + -1.1
3,649,144 - +0.7
3,649,159 + -0.4
3,649,159 + -0.1
3,649,160 - -1.9
3,649,321 + ECD_03463 0.21 +0.3
3,649,321 + ECD_03463 0.21 -0.5
3,649,321 + ECD_03463 0.21 +0.7
3,649,321 + ECD_03463 0.21 -0.9
3,649,321 + ECD_03463 0.21 -0.7
3,649,321 + ECD_03463 0.21 +0.5
3,649,321 + ECD_03463 0.21 +0.1
3,649,321 + ECD_03463 0.21 -0.3
3,649,321 + ECD_03463 0.21 -0.5
3,649,322 - ECD_03463 0.21 -0.6
3,649,322 - ECD_03463 0.21 -0.3
3,649,322 - ECD_03463 0.21 -0.7
3,649,322 - ECD_03463 0.21 +0.2
3,649,322 - ECD_03463 0.21 +0.1
3,649,372 - ECD_03463 0.25 -0.4
3,649,456 + ECD_03463 0.32 +0.1
3,649,456 + ECD_03463 0.32 +0.8
3,649,456 + ECD_03463 0.32 -0.8
3,649,456 + ECD_03463 0.32 +0.3
3,649,457 - ECD_03463 0.32 +0.4
3,649,461 - ECD_03463 0.33 -0.2
3,649,461 - ECD_03463 0.33 -0.6
3,649,542 + ECD_03463 0.39 -0.4
3,649,584 + ECD_03463 0.43 -0.2
3,649,585 - ECD_03463 0.43 -0.4
3,649,615 + ECD_03463 0.46 -0.2
3,649,682 + ECD_03463 0.51 -0.3
3,649,682 + ECD_03463 0.51 -0.5
3,649,686 + ECD_03463 0.52 -1.5
3,649,687 - ECD_03463 0.52 -0.1
3,649,687 - ECD_03463 0.52 -1.3
3,649,689 + ECD_03463 0.52 -0.1
3,649,689 + ECD_03463 0.52 +0.2
3,649,729 + ECD_03463 0.55 -1.0
3,649,729 + ECD_03463 0.55 -0.3
3,649,729 + ECD_03463 0.55 +0.7
3,649,730 - ECD_03463 0.55 -1.4
3,649,730 - ECD_03463 0.55 -1.0
3,649,750 - ECD_03463 0.57 +1.0
3,649,891 - ECD_03463 0.69 -0.8
3,649,948 - ECD_03463 0.74 -0.7
3,649,948 - ECD_03463 0.74 -1.1
3,649,948 - ECD_03463 0.74 -0.2
3,649,971 + ECD_03463 0.75 -0.7
3,649,973 + ECD_03463 0.76 -1.0
3,649,974 - ECD_03463 0.76 +0.0
3,650,022 + ECD_03463 0.80 -1.4
3,650,048 + ECD_03463 0.82 +0.9
3,650,049 - ECD_03463 0.82 -0.5
3,650,071 + ECD_03463 0.84 +0.5

Or see this region's nucleotide sequence