Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03192 and ECD_03193 are separated by 96 nucleotides ECD_03193 and ECD_03194 are separated by 125 nucleotides ECD_03194 and ECD_03195 are separated by 7 nucleotides ECD_03195 and ECD_03196 overlap by 1 nucleotides ECD_03196 and ECD_03197 overlap by 1 nucleotides
ECD_03192: ECD_03192 - 30S ribosomal subunit protein S7, at 3,333,212 to 3,333,682
_03192
ECD_03193: ECD_03193 - 30S ribosomal subunit protein S12, at 3,333,779 to 3,334,153
_03193
ECD_03194: ECD_03194 - mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein, at 3,334,279 to 3,334,566
_03194
ECD_03195: ECD_03195 - mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein, at 3,334,574 to 3,334,933
_03195
ECD_03196: ECD_03196 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis, at 3,334,933 to 3,335,319
_03196
ECD_03197: ECD_03197 - putative PAS domain-containing DNA-binding transcriptional regulator, at 3,335,319 to 3,336,041
_03197
Position (kb)
3334
3335 Strain fitness (log2 ratio)
-1
0
1 at 3334.261 kb on + strand at 3334.264 kb on - strand at 3334.264 kb on - strand at 3334.264 kb on - strand at 3335.366 kb on - strand at 3335.372 kb on - strand at 3335.372 kb on - strand at 3335.372 kb on - strand at 3335.372 kb on - strand at 3335.427 kb on - strand, within ECD_03197 at 3335.427 kb on - strand, within ECD_03197 at 3335.671 kb on - strand, within ECD_03197 at 3335.671 kb on - strand, within ECD_03197 at 3335.671 kb on - strand, within ECD_03197 at 3335.716 kb on - strand, within ECD_03197 at 3335.719 kb on - strand, within ECD_03197 at 3335.739 kb on - strand, within ECD_03197 at 3335.751 kb on - strand, within ECD_03197 at 3335.790 kb on - strand, within ECD_03197 at 3335.790 kb on - strand, within ECD_03197 at 3335.790 kb on - strand, within ECD_03197 at 3335.794 kb on - strand, within ECD_03197 at 3335.808 kb on - strand, within ECD_03197 at 3335.808 kb on - strand, within ECD_03197 at 3335.808 kb on - strand, within ECD_03197 at 3335.835 kb on - strand, within ECD_03197 at 3335.835 kb on - strand, within ECD_03197 at 3335.835 kb on - strand, within ECD_03197 at 3335.835 kb on - strand, within ECD_03197
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 3,334,261 + -0.3 3,334,264 - -0.8 3,334,264 - -0.7 3,334,264 - +0.2 3,335,366 - -0.0 3,335,372 - +0.4 3,335,372 - +0.1 3,335,372 - +0.7 3,335,372 - -0.1 3,335,427 - ECD_03197 0.15 -0.7 3,335,427 - ECD_03197 0.15 -1.0 3,335,671 - ECD_03197 0.49 +1.2 3,335,671 - ECD_03197 0.49 -0.4 3,335,671 - ECD_03197 0.49 -0.5 3,335,716 - ECD_03197 0.55 -0.0 3,335,719 - ECD_03197 0.55 +0.2 3,335,739 - ECD_03197 0.58 -0.5 3,335,751 - ECD_03197 0.60 -1.5 3,335,790 - ECD_03197 0.65 -1.0 3,335,790 - ECD_03197 0.65 +0.0 3,335,790 - ECD_03197 0.65 -1.5 3,335,794 - ECD_03197 0.66 -0.7 3,335,808 - ECD_03197 0.68 +0.8 3,335,808 - ECD_03197 0.68 +1.2 3,335,808 - ECD_03197 0.68 +0.9 3,335,835 - ECD_03197 0.71 -0.5 3,335,835 - ECD_03197 0.71 +0.7 3,335,835 - ECD_03197 0.71 +0.1 3,335,835 - ECD_03197 0.71 +0.4
Or see this region's nucleotide sequence