Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02898 and ECD_02899 are separated by 45 nucleotides ECD_02899 and ECD_02900 are separated by 318 nucleotides ECD_02900 and ECD_02901 are separated by 30 nucleotides ECD_02901 and ECD_02902 are separated by 47 nucleotides
ECD_02898: ECD_02898 - quorum sensing sensory histidine kinase in two-component regulatory system with QseB, at 3,037,921 to 3,039,270
_02898
ECD_02899: ECD_02899 - inner membrane protein, at 3,039,316 to 3,039,648
_02899
ECD_02900: ECD_02900 - NADPH quinone reductase, at 3,039,967 to 3,040,548
_02900
ECD_02901: ECD_02901 - quinol monooxygenase, at 3,040,579 to 3,040,893
_02901
ECD_02902: ECD_02902 - DNA topoisomerase IV, subunit B, at 3,040,941 to 3,042,833
_02902
Position (kb)
3039
3040
3041 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3038.978 kb on + strand, within ECD_02898 at 3039.133 kb on + strand, within ECD_02898 at 3039.133 kb on + strand, within ECD_02898 at 3039.282 kb on - strand at 3039.392 kb on - strand, within ECD_02899 at 3039.929 kb on + strand at 3039.929 kb on + strand at 3039.930 kb on - strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.933 kb on - strand at 3039.934 kb on + strand at 3040.220 kb on + strand, within ECD_02900 at 3040.220 kb on + strand, within ECD_02900 at 3040.221 kb on - strand, within ECD_02900 at 3040.246 kb on + strand, within ECD_02900 at 3040.323 kb on + strand, within ECD_02900 at 3040.323 kb on + strand, within ECD_02900 at 3040.409 kb on - strand, within ECD_02900 at 3040.409 kb on - strand, within ECD_02900 at 3040.464 kb on + strand, within ECD_02900 at 3040.465 kb on - strand, within ECD_02900 at 3040.506 kb on + strand at 3040.506 kb on + strand at 3040.507 kb on - strand at 3040.546 kb on + strand at 3040.550 kb on + strand at 3040.550 kb on + strand at 3040.550 kb on + strand at 3040.564 kb on + strand at 3040.654 kb on - strand, within ECD_02901 at 3040.756 kb on - strand, within ECD_02901 at 3040.828 kb on + strand, within ECD_02901 at 3040.828 kb on + strand, within ECD_02901 at 3040.841 kb on + strand, within ECD_02901 at 3040.873 kb on - strand at 3040.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 3,038,978 + ECD_02898 0.78 -1.3 3,039,133 + ECD_02898 0.90 -0.6 3,039,133 + ECD_02898 0.90 -0.8 3,039,282 - -2.2 3,039,392 - ECD_02899 0.23 +0.4 3,039,929 + -0.8 3,039,929 + -1.0 3,039,930 - -0.6 3,039,932 + +0.4 3,039,932 + -0.2 3,039,932 + -0.3 3,039,932 + -0.2 3,039,932 + -1.1 3,039,933 - -0.2 3,039,934 + -0.5 3,040,220 + ECD_02900 0.43 -1.1 3,040,220 + ECD_02900 0.43 +0.7 3,040,221 - ECD_02900 0.44 -0.1 3,040,246 + ECD_02900 0.48 +0.6 3,040,323 + ECD_02900 0.61 +0.3 3,040,323 + ECD_02900 0.61 +0.4 3,040,409 - ECD_02900 0.76 +0.6 3,040,409 - ECD_02900 0.76 +0.8 3,040,464 + ECD_02900 0.85 +1.0 3,040,465 - ECD_02900 0.86 -0.9 3,040,506 + -0.2 3,040,506 + -0.7 3,040,507 - +0.2 3,040,546 + +0.7 3,040,550 + -0.1 3,040,550 + +2.6 3,040,550 + -0.1 3,040,564 + -1.7 3,040,654 - ECD_02901 0.24 +0.4 3,040,756 - ECD_02901 0.56 -1.3 3,040,828 + ECD_02901 0.79 +0.0 3,040,828 + ECD_02901 0.79 +0.1 3,040,841 + ECD_02901 0.83 +2.1 3,040,873 - +0.9 3,040,892 - -0.4
Or see this region's nucleotide sequence