Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02848 and ECD_02849 are separated by 250 nucleotides ECD_02849 and ECD_02850 are separated by 6 nucleotides
ECD_02848: ECD_02848 - glycolate oxidase subunit, FAD-linked, at 2,986,761 to 2,988,260
_02848
ECD_02849: ECD_02849 - glycolate-inducible glc operon transcriptional repressor; autorepressor, at 2,988,511 to 2,989,275
_02849
ECD_02850: ECD_02850 - putative DNA-binding transcriptional regulator, at 2,989,282 to 2,990,424
_02850
Position (kb)
2988
2989
2990 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2987.615 kb on + strand, within ECD_02848 at 2987.615 kb on + strand, within ECD_02848 at 2987.615 kb on + strand, within ECD_02848 at 2987.616 kb on - strand, within ECD_02848 at 2987.733 kb on + strand, within ECD_02848 at 2987.733 kb on + strand, within ECD_02848 at 2987.805 kb on + strand, within ECD_02848 at 2987.806 kb on - strand, within ECD_02848 at 2987.830 kb on + strand, within ECD_02848 at 2987.830 kb on + strand, within ECD_02848 at 2987.831 kb on - strand, within ECD_02848 at 2987.831 kb on - strand, within ECD_02848 at 2987.831 kb on - strand, within ECD_02848 at 2987.834 kb on - strand, within ECD_02848 at 2988.248 kb on - strand at 2988.265 kb on - strand at 2988.265 kb on - strand at 2988.265 kb on - strand at 2988.325 kb on + strand at 2988.326 kb on - strand at 2988.326 kb on - strand at 2988.352 kb on - strand at 2988.359 kb on + strand at 2988.359 kb on + strand at 2988.468 kb on + strand at 2988.468 kb on + strand at 2988.489 kb on + strand at 2988.489 kb on + strand at 2988.490 kb on - strand at 2988.490 kb on - strand at 2988.493 kb on + strand at 2988.493 kb on + strand at 2988.532 kb on - strand at 2988.566 kb on + strand at 2988.570 kb on + strand at 2988.581 kb on + strand at 2988.793 kb on + strand, within ECD_02849 at 2988.794 kb on - strand, within ECD_02849 at 2988.819 kb on - strand, within ECD_02849 at 2988.892 kb on + strand, within ECD_02849 at 2989.014 kb on + strand, within ECD_02849 at 2989.014 kb on + strand, within ECD_02849 at 2989.015 kb on - strand, within ECD_02849 at 2989.044 kb on + strand, within ECD_02849 at 2989.064 kb on + strand, within ECD_02849 at 2989.068 kb on + strand, within ECD_02849 at 2989.069 kb on - strand, within ECD_02849 at 2989.126 kb on + strand, within ECD_02849 at 2989.126 kb on + strand, within ECD_02849 at 2989.127 kb on - strand, within ECD_02849 at 2989.273 kb on + strand at 2989.274 kb on - strand at 2989.283 kb on + strand at 2989.284 kb on - strand at 2989.299 kb on - strand at 2989.316 kb on + strand at 2989.317 kb on - strand at 2989.347 kb on + strand at 2989.348 kb on - strand at 2989.360 kb on - strand at 2989.363 kb on - strand at 2989.363 kb on - strand at 2989.655 kb on + strand, within ECD_02850 at 2989.655 kb on + strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.663 kb on - strand, within ECD_02850 at 2989.679 kb on + strand, within ECD_02850 at 2989.679 kb on + strand, within ECD_02850 at 2989.684 kb on - strand, within ECD_02850 at 2989.684 kb on - strand, within ECD_02850 at 2989.684 kb on - strand, within ECD_02850 at 2989.720 kb on - strand, within ECD_02850 at 2990.055 kb on + strand, within ECD_02850 at 2990.056 kb on - strand, within ECD_02850 at 2990.056 kb on - strand, within ECD_02850 at 2990.185 kb on - strand, within ECD_02850 at 2990.185 kb on - strand, within ECD_02850 at 2990.185 kb on - strand, within ECD_02850 at 2990.188 kb on + strand, within ECD_02850 at 2990.188 kb on + strand, within ECD_02850 at 2990.189 kb on - strand, within ECD_02850 at 2990.203 kb on - strand, within ECD_02850 at 2990.212 kb on + strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,987,615 + ECD_02848 0.57 -0.8 2,987,615 + ECD_02848 0.57 +0.4 2,987,615 + ECD_02848 0.57 +0.5 2,987,616 - ECD_02848 0.57 -1.2 2,987,733 + ECD_02848 0.65 -0.4 2,987,733 + ECD_02848 0.65 -1.3 2,987,805 + ECD_02848 0.70 -0.2 2,987,806 - ECD_02848 0.70 -1.0 2,987,830 + ECD_02848 0.71 +0.4 2,987,830 + ECD_02848 0.71 +2.0 2,987,831 - ECD_02848 0.71 +0.5 2,987,831 - ECD_02848 0.71 -0.1 2,987,831 - ECD_02848 0.71 -1.2 2,987,834 - ECD_02848 0.72 +0.6 2,988,248 - -0.2 2,988,265 - -0.6 2,988,265 - -1.0 2,988,265 - +0.1 2,988,325 + -0.3 2,988,326 - +0.6 2,988,326 - -0.8 2,988,352 - -1.8 2,988,359 + -0.2 2,988,359 + -0.8 2,988,468 + +0.4 2,988,468 + +0.5 2,988,489 + -0.2 2,988,489 + -1.4 2,988,490 - -0.9 2,988,490 - -1.0 2,988,493 + -0.6 2,988,493 + -0.6 2,988,532 - -0.5 2,988,566 + +0.3 2,988,570 + +0.2 2,988,581 + -0.4 2,988,793 + ECD_02849 0.37 -0.8 2,988,794 - ECD_02849 0.37 +0.6 2,988,819 - ECD_02849 0.40 +1.2 2,988,892 + ECD_02849 0.50 +0.6 2,989,014 + ECD_02849 0.66 -1.7 2,989,014 + ECD_02849 0.66 -0.9 2,989,015 - ECD_02849 0.66 -0.4 2,989,044 + ECD_02849 0.70 -0.5 2,989,064 + ECD_02849 0.72 -0.1 2,989,068 + ECD_02849 0.73 -1.4 2,989,069 - ECD_02849 0.73 -1.1 2,989,126 + ECD_02849 0.80 +0.3 2,989,126 + ECD_02849 0.80 -0.9 2,989,127 - ECD_02849 0.81 -1.7 2,989,273 + -0.9 2,989,274 - -0.7 2,989,283 + -1.0 2,989,284 - -1.3 2,989,299 - -0.2 2,989,316 + -0.0 2,989,317 - +0.4 2,989,347 + -0.1 2,989,348 - +1.6 2,989,360 - -1.0 2,989,363 - +0.2 2,989,363 - +0.7 2,989,655 + ECD_02850 0.33 -1.6 2,989,655 + ECD_02850 0.33 +0.1 2,989,656 - ECD_02850 0.33 -0.3 2,989,656 - ECD_02850 0.33 +0.3 2,989,656 - ECD_02850 0.33 -0.2 2,989,656 - ECD_02850 0.33 -0.0 2,989,656 - ECD_02850 0.33 +0.2 2,989,656 - ECD_02850 0.33 +0.5 2,989,663 - ECD_02850 0.33 -0.8 2,989,679 + ECD_02850 0.35 +0.9 2,989,679 + ECD_02850 0.35 +0.1 2,989,684 - ECD_02850 0.35 +0.2 2,989,684 - ECD_02850 0.35 -1.3 2,989,684 - ECD_02850 0.35 -0.8 2,989,720 - ECD_02850 0.38 -0.2 2,990,055 + ECD_02850 0.68 -0.9 2,990,056 - ECD_02850 0.68 -0.2 2,990,056 - ECD_02850 0.68 -0.8 2,990,185 - ECD_02850 0.79 +0.8 2,990,185 - ECD_02850 0.79 -0.5 2,990,185 - ECD_02850 0.79 +0.8 2,990,188 + ECD_02850 0.79 -0.6 2,990,188 + ECD_02850 0.79 -0.3 2,990,189 - ECD_02850 0.79 +1.5 2,990,203 - ECD_02850 0.81 -0.4 2,990,212 + ECD_02850 0.81 +0.2 2,990,213 - ECD_02850 0.81 +0.2 2,990,213 - ECD_02850 0.81 -0.4 2,990,213 - ECD_02850 0.81 +0.2 2,990,213 - ECD_02850 0.81 -1.1
Or see this region's nucleotide sequence