Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02618 and ECD_02619 are separated by 318 nucleotides ECD_02619 and ECD_02620 are separated by 26 nucleotides
ECD_02618: ECD_02618 - putative SDR family oxidoreductase, at 2,731,649 to 2,732,434
_02618
ECD_02619: ECD_02619 - putative MFS transporter, inner membrane protein, at 2,732,753 to 2,734,030
_02619
ECD_02620: ECD_02620 - putative kinase, at 2,734,057 to 2,735,535
_02620
Position (kb)
2732
2733
2734
2735 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2731.962 kb on - strand, within ECD_02618 at 2732.034 kb on + strand, within ECD_02618 at 2732.039 kb on + strand, within ECD_02618 at 2732.120 kb on - strand, within ECD_02618 at 2732.290 kb on + strand, within ECD_02618 at 2732.434 kb on + strand at 2732.434 kb on + strand at 2732.435 kb on - strand at 2732.438 kb on + strand at 2732.474 kb on + strand at 2732.499 kb on - strand at 2732.511 kb on - strand at 2732.541 kb on + strand at 2732.654 kb on - strand at 2732.835 kb on + strand at 2733.035 kb on + strand, within ECD_02619 at 2733.094 kb on - strand, within ECD_02619 at 2733.142 kb on + strand, within ECD_02619 at 2733.195 kb on + strand, within ECD_02619 at 2733.195 kb on + strand, within ECD_02619 at 2733.196 kb on - strand, within ECD_02619 at 2733.215 kb on - strand, within ECD_02619 at 2733.275 kb on - strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.283 kb on + strand, within ECD_02619 at 2733.294 kb on - strand, within ECD_02619 at 2733.462 kb on - strand, within ECD_02619 at 2733.462 kb on - strand, within ECD_02619 at 2733.462 kb on - strand, within ECD_02619 at 2733.489 kb on - strand, within ECD_02619 at 2733.489 kb on - strand, within ECD_02619 at 2733.489 kb on - strand, within ECD_02619 at 2733.503 kb on + strand, within ECD_02619 at 2733.503 kb on + strand, within ECD_02619 at 2733.503 kb on + strand, within ECD_02619 at 2733.504 kb on - strand, within ECD_02619 at 2733.504 kb on - strand, within ECD_02619 at 2733.530 kb on + strand, within ECD_02619 at 2733.531 kb on - strand, within ECD_02619 at 2733.555 kb on + strand, within ECD_02619 at 2733.588 kb on + strand, within ECD_02619 at 2733.588 kb on + strand, within ECD_02619 at 2733.589 kb on - strand, within ECD_02619 at 2733.599 kb on + strand, within ECD_02619 at 2733.600 kb on - strand, within ECD_02619 at 2733.600 kb on - strand, within ECD_02619 at 2733.664 kb on - strand, within ECD_02619 at 2733.688 kb on + strand, within ECD_02619 at 2733.746 kb on + strand, within ECD_02619 at 2733.746 kb on + strand, within ECD_02619 at 2733.800 kb on + strand, within ECD_02619 at 2733.800 kb on + strand, within ECD_02619 at 2733.800 kb on + strand, within ECD_02619 at 2733.801 kb on - strand, within ECD_02619 at 2733.806 kb on - strand, within ECD_02619 at 2733.820 kb on - strand, within ECD_02619 at 2733.823 kb on + strand, within ECD_02619 at 2733.824 kb on - strand, within ECD_02619 at 2733.871 kb on + strand, within ECD_02619 at 2733.872 kb on - strand, within ECD_02619 at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.920 kb on - strand at 2733.920 kb on - strand at 2733.920 kb on - strand at 2733.964 kb on + strand at 2734.018 kb on + strand at 2734.018 kb on + strand at 2734.018 kb on + strand at 2734.019 kb on - strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.029 kb on - strand at 2734.029 kb on - strand at 2734.029 kb on - strand at 2734.029 kb on - strand at 2734.043 kb on - strand at 2734.069 kb on + strand at 2734.076 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.118 kb on - strand at 2734.157 kb on + strand at 2734.160 kb on + strand at 2734.226 kb on + strand, within ECD_02620 at 2734.226 kb on + strand, within ECD_02620 at 2734.226 kb on + strand, within ECD_02620 at 2734.226 kb on + strand, within ECD_02620 at 2734.269 kb on + strand, within ECD_02620 at 2734.269 kb on + strand, within ECD_02620 at 2734.278 kb on + strand, within ECD_02620 at 2734.278 kb on + strand, within ECD_02620 at 2734.390 kb on + strand, within ECD_02620 at 2734.401 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.467 kb on + strand, within ECD_02620 at 2734.468 kb on - strand, within ECD_02620 at 2734.487 kb on - strand, within ECD_02620 at 2734.487 kb on - strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.551 kb on + strand, within ECD_02620 at 2734.552 kb on - strand, within ECD_02620 at 2734.557 kb on + strand, within ECD_02620 at 2734.572 kb on + strand, within ECD_02620 at 2734.573 kb on - strand, within ECD_02620 at 2734.614 kb on + strand, within ECD_02620 at 2734.691 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.751 kb on - strand, within ECD_02620 at 2734.751 kb on - strand, within ECD_02620 at 2734.802 kb on - strand, within ECD_02620 at 2734.802 kb on - strand, within ECD_02620 at 2734.812 kb on + strand, within ECD_02620 at 2734.812 kb on + strand, within ECD_02620 at 2734.821 kb on + strand, within ECD_02620 at 2734.822 kb on - strand, within ECD_02620 at 2734.840 kb on + strand, within ECD_02620 at 2734.841 kb on - strand, within ECD_02620 at 2734.849 kb on + strand, within ECD_02620 at 2734.911 kb on - strand, within ECD_02620 at 2734.911 kb on - strand, within ECD_02620 at 2734.911 kb on - strand, within ECD_02620 at 2734.953 kb on - strand, within ECD_02620 at 2734.989 kb on + strand, within ECD_02620
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,731,962 - ECD_02618 0.40 +1.6 2,732,034 + ECD_02618 0.49 -1.0 2,732,039 + ECD_02618 0.50 +0.9 2,732,120 - ECD_02618 0.60 +0.6 2,732,290 + ECD_02618 0.82 -0.5 2,732,434 + -0.5 2,732,434 + +0.7 2,732,435 - +0.5 2,732,438 + -0.5 2,732,474 + -0.2 2,732,499 - +0.2 2,732,511 - -0.1 2,732,541 + -0.5 2,732,654 - -0.1 2,732,835 + +0.3 2,733,035 + ECD_02619 0.22 +1.1 2,733,094 - ECD_02619 0.27 +0.4 2,733,142 + ECD_02619 0.30 -0.1 2,733,195 + ECD_02619 0.35 +0.6 2,733,195 + ECD_02619 0.35 -0.0 2,733,196 - ECD_02619 0.35 -0.7 2,733,215 - ECD_02619 0.36 +0.6 2,733,275 - ECD_02619 0.41 -0.6 2,733,281 + ECD_02619 0.41 +0.1 2,733,281 + ECD_02619 0.41 +0.2 2,733,281 + ECD_02619 0.41 +0.7 2,733,281 + ECD_02619 0.41 -1.1 2,733,281 + ECD_02619 0.41 +1.6 2,733,282 - ECD_02619 0.41 +1.5 2,733,282 - ECD_02619 0.41 -0.5 2,733,282 - ECD_02619 0.41 -0.2 2,733,282 - ECD_02619 0.41 -0.1 2,733,282 - ECD_02619 0.41 +0.3 2,733,283 + ECD_02619 0.41 +1.7 2,733,294 - ECD_02619 0.42 -0.2 2,733,462 - ECD_02619 0.55 -0.4 2,733,462 - ECD_02619 0.55 +0.6 2,733,462 - ECD_02619 0.55 -0.7 2,733,489 - ECD_02619 0.58 -0.4 2,733,489 - ECD_02619 0.58 -0.7 2,733,489 - ECD_02619 0.58 +1.3 2,733,503 + ECD_02619 0.59 +0.5 2,733,503 + ECD_02619 0.59 -1.7 2,733,503 + ECD_02619 0.59 +0.4 2,733,504 - ECD_02619 0.59 +0.5 2,733,504 - ECD_02619 0.59 +1.6 2,733,530 + ECD_02619 0.61 +1.1 2,733,531 - ECD_02619 0.61 +0.4 2,733,555 + ECD_02619 0.63 -0.2 2,733,588 + ECD_02619 0.65 -0.9 2,733,588 + ECD_02619 0.65 -1.3 2,733,589 - ECD_02619 0.65 +2.4 2,733,599 + ECD_02619 0.66 +0.0 2,733,600 - ECD_02619 0.66 +0.3 2,733,600 - ECD_02619 0.66 +0.6 2,733,664 - ECD_02619 0.71 -0.1 2,733,688 + ECD_02619 0.73 -0.3 2,733,746 + ECD_02619 0.78 -0.1 2,733,746 + ECD_02619 0.78 +0.8 2,733,800 + ECD_02619 0.82 +0.8 2,733,800 + ECD_02619 0.82 +0.0 2,733,800 + ECD_02619 0.82 +0.1 2,733,801 - ECD_02619 0.82 +0.4 2,733,806 - ECD_02619 0.82 +0.8 2,733,820 - ECD_02619 0.83 +1.5 2,733,823 + ECD_02619 0.84 +1.5 2,733,824 - ECD_02619 0.84 -0.3 2,733,871 + ECD_02619 0.87 -0.1 2,733,872 - ECD_02619 0.88 -1.7 2,733,919 + +0.2 2,733,919 + +0.4 2,733,919 + -0.3 2,733,919 + +0.5 2,733,919 + +0.4 2,733,919 + +0.1 2,733,920 - +0.3 2,733,920 - -0.4 2,733,920 - -0.4 2,733,964 + +1.1 2,734,018 + -0.9 2,734,018 + -0.6 2,734,018 + +0.0 2,734,019 - +1.1 2,734,028 + +0.6 2,734,028 + -0.5 2,734,028 + +0.4 2,734,028 + -1.1 2,734,028 + +0.8 2,734,029 - -1.0 2,734,029 - -1.5 2,734,029 - +0.0 2,734,029 - +0.5 2,734,043 - +0.2 2,734,069 + -0.1 2,734,076 + +1.1 2,734,117 + -1.1 2,734,117 + +0.3 2,734,117 + -0.4 2,734,117 + -0.1 2,734,117 + +1.1 2,734,117 + +0.2 2,734,117 + -2.1 2,734,117 + +0.6 2,734,117 + +0.2 2,734,118 - -1.4 2,734,157 + +0.3 2,734,160 + +0.8 2,734,226 + ECD_02620 0.11 -0.4 2,734,226 + ECD_02620 0.11 +1.5 2,734,226 + ECD_02620 0.11 +0.4 2,734,226 + ECD_02620 0.11 +0.2 2,734,269 + ECD_02620 0.14 +0.4 2,734,269 + ECD_02620 0.14 -0.8 2,734,278 + ECD_02620 0.15 -0.4 2,734,278 + ECD_02620 0.15 +1.2 2,734,390 + ECD_02620 0.23 +0.2 2,734,401 + ECD_02620 0.23 -0.7 2,734,417 + ECD_02620 0.24 +0.0 2,734,417 + ECD_02620 0.24 -0.7 2,734,417 + ECD_02620 0.24 +0.0 2,734,417 + ECD_02620 0.24 -0.2 2,734,417 + ECD_02620 0.24 +0.6 2,734,418 - ECD_02620 0.24 -0.2 2,734,418 - ECD_02620 0.24 -0.0 2,734,418 - ECD_02620 0.24 -1.2 2,734,418 - ECD_02620 0.24 -0.3 2,734,418 - ECD_02620 0.24 +0.5 2,734,467 + ECD_02620 0.28 -0.4 2,734,468 - ECD_02620 0.28 +0.6 2,734,487 - ECD_02620 0.29 -2.0 2,734,487 - ECD_02620 0.29 -0.9 2,734,510 + ECD_02620 0.31 -1.6 2,734,510 + ECD_02620 0.31 +0.4 2,734,510 + ECD_02620 0.31 -0.2 2,734,510 + ECD_02620 0.31 +0.1 2,734,510 + ECD_02620 0.31 +0.5 2,734,512 + ECD_02620 0.31 +0.3 2,734,512 + ECD_02620 0.31 +1.8 2,734,512 + ECD_02620 0.31 +0.2 2,734,512 + ECD_02620 0.31 -0.1 2,734,551 + ECD_02620 0.33 +0.2 2,734,552 - ECD_02620 0.33 -0.1 2,734,557 + ECD_02620 0.34 +1.2 2,734,572 + ECD_02620 0.35 -0.3 2,734,573 - ECD_02620 0.35 +0.4 2,734,614 + ECD_02620 0.38 -1.1 2,734,691 + ECD_02620 0.43 +0.1 2,734,750 + ECD_02620 0.47 +0.6 2,734,750 + ECD_02620 0.47 -0.1 2,734,750 + ECD_02620 0.47 +0.1 2,734,750 + ECD_02620 0.47 -0.0 2,734,751 - ECD_02620 0.47 +0.0 2,734,751 - ECD_02620 0.47 +0.2 2,734,802 - ECD_02620 0.50 -0.1 2,734,802 - ECD_02620 0.50 -1.4 2,734,812 + ECD_02620 0.51 -0.7 2,734,812 + ECD_02620 0.51 +0.3 2,734,821 + ECD_02620 0.52 +0.7 2,734,822 - ECD_02620 0.52 +0.1 2,734,840 + ECD_02620 0.53 +0.3 2,734,841 - ECD_02620 0.53 -0.1 2,734,849 + ECD_02620 0.54 +2.2 2,734,911 - ECD_02620 0.58 +0.2 2,734,911 - ECD_02620 0.58 +0.2 2,734,911 - ECD_02620 0.58 -1.3 2,734,953 - ECD_02620 0.61 -0.2 2,734,989 + ECD_02620 0.63 +0.9
Or see this region's nucleotide sequence