Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02516 and ECD_02517 are separated by 22 nucleotides ECD_02517 and ECD_02518 are separated by 13 nucleotides
ECD_02516: ECD_02516 - L-2-hydroxyglutarate oxidase, at 2,629,769 to 2,631,037
_02516
ECD_02517: ECD_02517 - succinate-semialdehyde dehydrogenase I, NADP-dependent, at 2,631,060 to 2,632,508
_02517
ECD_02518: ECD_02518 - 4-aminobutyrate aminotransferase, PLP-dependent, at 2,632,522 to 2,633,802
_02518
Position (kb)
2631
2632
2633 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2630.263 kb on + strand, within ECD_02516 at 2630.264 kb on - strand, within ECD_02516 at 2630.267 kb on + strand, within ECD_02516 at 2630.267 kb on + strand, within ECD_02516 at 2630.299 kb on + strand, within ECD_02516 at 2630.299 kb on + strand, within ECD_02516 at 2630.316 kb on + strand, within ECD_02516 at 2630.316 kb on + strand, within ECD_02516 at 2630.316 kb on + strand, within ECD_02516 at 2630.320 kb on + strand, within ECD_02516 at 2630.359 kb on + strand, within ECD_02516 at 2630.359 kb on + strand, within ECD_02516 at 2630.444 kb on + strand, within ECD_02516 at 2630.445 kb on - strand, within ECD_02516 at 2630.492 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.685 kb on + strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.686 kb on - strand, within ECD_02516 at 2630.732 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.753 kb on + strand, within ECD_02516 at 2630.754 kb on - strand, within ECD_02516 at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.930 kb on + strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.931 kb on - strand at 2630.932 kb on + strand at 2630.932 kb on + strand at 2630.932 kb on + strand at 2630.932 kb on + strand at 2630.933 kb on - strand at 2630.946 kb on + strand at 2630.946 kb on + strand at 2630.946 kb on + strand at 2630.947 kb on - strand at 2630.971 kb on + strand at 2630.971 kb on + strand at 2630.971 kb on + strand at 2630.972 kb on - strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.001 kb on + strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.002 kb on - strand at 2631.016 kb on - strand at 2631.029 kb on - strand at 2631.029 kb on - strand at 2631.056 kb on - strand at 2631.077 kb on + strand at 2631.077 kb on + strand at 2631.082 kb on + strand at 2631.083 kb on - strand at 2631.347 kb on - strand, within ECD_02517 at 2631.391 kb on - strand, within ECD_02517 at 2631.404 kb on + strand, within ECD_02517 at 2631.438 kb on + strand, within ECD_02517 at 2631.438 kb on + strand, within ECD_02517 at 2631.438 kb on + strand, within ECD_02517 at 2631.439 kb on - strand, within ECD_02517 at 2631.673 kb on + strand, within ECD_02517 at 2631.673 kb on + strand, within ECD_02517 at 2631.677 kb on + strand, within ECD_02517 at 2631.677 kb on + strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.781 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2632.088 kb on + strand, within ECD_02517 at 2632.308 kb on + strand, within ECD_02517 at 2632.308 kb on + strand, within ECD_02517 at 2632.315 kb on - strand, within ECD_02517 at 2632.315 kb on - strand, within ECD_02517 at 2632.327 kb on + strand, within ECD_02517 at 2632.327 kb on + strand, within ECD_02517 at 2632.392 kb on - strand at 2632.459 kb on - strand at 2632.488 kb on + strand at 2632.488 kb on + strand at 2632.488 kb on + strand at 2632.491 kb on - strand at 2632.533 kb on + strand at 2632.648 kb on + strand at 2632.648 kb on + strand at 2632.648 kb on + strand at 2632.648 kb on + strand at 2632.768 kb on + strand, within ECD_02518 at 2632.768 kb on + strand, within ECD_02518 at 2632.769 kb on - strand, within ECD_02518 at 2632.777 kb on + strand, within ECD_02518 at 2632.777 kb on + strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.797 kb on + strand, within ECD_02518 at 2632.798 kb on - strand, within ECD_02518 at 2632.923 kb on + strand, within ECD_02518 at 2632.951 kb on + strand, within ECD_02518 at 2632.984 kb on + strand, within ECD_02518 at 2633.032 kb on + strand, within ECD_02518 at 2633.055 kb on - strand, within ECD_02518 at 2633.055 kb on - strand, within ECD_02518 at 2633.055 kb on - strand, within ECD_02518 at 2633.164 kb on + strand, within ECD_02518 at 2633.165 kb on - strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.185 kb on - strand, within ECD_02518 at 2633.185 kb on - strand, within ECD_02518 at 2633.311 kb on - strand, within ECD_02518 at 2633.375 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.414 kb on - strand, within ECD_02518 at 2633.414 kb on - strand, within ECD_02518
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,630,263 + ECD_02516 0.39 -0.6 2,630,264 - ECD_02516 0.39 -0.7 2,630,267 + ECD_02516 0.39 -0.9 2,630,267 + ECD_02516 0.39 +0.8 2,630,299 + ECD_02516 0.42 +0.8 2,630,299 + ECD_02516 0.42 -0.0 2,630,316 + ECD_02516 0.43 +0.4 2,630,316 + ECD_02516 0.43 -0.8 2,630,316 + ECD_02516 0.43 +0.3 2,630,320 + ECD_02516 0.43 +0.9 2,630,359 + ECD_02516 0.46 -1.5 2,630,359 + ECD_02516 0.46 -0.5 2,630,444 + ECD_02516 0.53 +1.1 2,630,445 - ECD_02516 0.53 +0.2 2,630,492 + ECD_02516 0.57 -0.0 2,630,685 + ECD_02516 0.72 -0.5 2,630,685 + ECD_02516 0.72 -0.5 2,630,685 + ECD_02516 0.72 -0.8 2,630,685 + ECD_02516 0.72 +0.0 2,630,685 + ECD_02516 0.72 +0.2 2,630,685 + ECD_02516 0.72 +0.5 2,630,685 + ECD_02516 0.72 -0.0 2,630,686 - ECD_02516 0.72 -0.0 2,630,686 - ECD_02516 0.72 +0.4 2,630,686 - ECD_02516 0.72 -1.9 2,630,686 - ECD_02516 0.72 +0.5 2,630,732 + ECD_02516 0.76 -1.0 2,630,753 + ECD_02516 0.78 -0.1 2,630,753 + ECD_02516 0.78 +0.2 2,630,753 + ECD_02516 0.78 +0.9 2,630,753 + ECD_02516 0.78 -0.1 2,630,753 + ECD_02516 0.78 +0.4 2,630,753 + ECD_02516 0.78 +0.6 2,630,753 + ECD_02516 0.78 +0.5 2,630,753 + ECD_02516 0.78 -0.4 2,630,753 + ECD_02516 0.78 -0.0 2,630,754 - ECD_02516 0.78 -0.5 2,630,930 + +0.5 2,630,930 + -0.6 2,630,930 + -0.3 2,630,930 + +0.1 2,630,930 + +0.7 2,630,930 + +0.2 2,630,930 + +0.6 2,630,931 - +0.0 2,630,931 - -0.2 2,630,931 - -1.7 2,630,931 - +0.3 2,630,931 - -0.8 2,630,932 + +0.3 2,630,932 + -0.4 2,630,932 + -0.1 2,630,932 + +0.3 2,630,933 - -0.0 2,630,946 + -1.2 2,630,946 + +0.4 2,630,946 + -0.3 2,630,947 - +0.3 2,630,971 + -0.4 2,630,971 + -0.7 2,630,971 + +0.2 2,630,972 - -0.2 2,631,001 + -0.2 2,631,001 + -1.1 2,631,001 + -0.6 2,631,001 + -0.2 2,631,001 + +0.8 2,631,001 + -0.8 2,631,001 + +0.5 2,631,001 + -1.1 2,631,001 + -0.1 2,631,002 - -0.1 2,631,002 - -0.5 2,631,002 - -0.4 2,631,002 - -0.1 2,631,002 - -0.3 2,631,002 - -0.4 2,631,002 - +0.9 2,631,002 - -0.1 2,631,002 - +0.9 2,631,002 - +0.4 2,631,002 - -0.3 2,631,002 - -1.6 2,631,002 - -0.2 2,631,016 - -1.0 2,631,029 - +0.5 2,631,029 - +0.8 2,631,056 - -0.0 2,631,077 + -0.5 2,631,077 + +0.7 2,631,082 + +0.3 2,631,083 - +0.1 2,631,347 - ECD_02517 0.20 +0.0 2,631,391 - ECD_02517 0.23 -0.1 2,631,404 + ECD_02517 0.24 -2.0 2,631,438 + ECD_02517 0.26 +0.4 2,631,438 + ECD_02517 0.26 -0.2 2,631,438 + ECD_02517 0.26 -0.1 2,631,439 - ECD_02517 0.26 -0.3 2,631,673 + ECD_02517 0.42 +0.7 2,631,673 + ECD_02517 0.42 -1.4 2,631,677 + ECD_02517 0.43 -0.7 2,631,677 + ECD_02517 0.43 -1.1 2,631,678 - ECD_02517 0.43 +0.0 2,631,678 - ECD_02517 0.43 -1.6 2,631,678 - ECD_02517 0.43 +1.2 2,631,678 - ECD_02517 0.43 -0.5 2,631,781 + ECD_02517 0.50 -1.2 2,631,945 + ECD_02517 0.61 -1.4 2,631,945 + ECD_02517 0.61 -0.3 2,631,945 + ECD_02517 0.61 -1.2 2,631,945 + ECD_02517 0.61 -0.6 2,631,945 + ECD_02517 0.61 -0.7 2,631,945 + ECD_02517 0.61 +1.6 2,631,964 - ECD_02517 0.62 -0.5 2,631,964 - ECD_02517 0.62 -0.3 2,631,964 - ECD_02517 0.62 +0.0 2,631,964 - ECD_02517 0.62 -0.1 2,632,088 + ECD_02517 0.71 -0.2 2,632,308 + ECD_02517 0.86 -0.1 2,632,308 + ECD_02517 0.86 -0.5 2,632,315 - ECD_02517 0.87 -1.8 2,632,315 - ECD_02517 0.87 +0.0 2,632,327 + ECD_02517 0.87 -0.1 2,632,327 + ECD_02517 0.87 +0.2 2,632,392 - -0.5 2,632,459 - -0.2 2,632,488 + -0.5 2,632,488 + +0.6 2,632,488 + +1.2 2,632,491 - -1.7 2,632,533 + -0.4 2,632,648 + -0.3 2,632,648 + +0.8 2,632,648 + -0.1 2,632,648 + +0.7 2,632,768 + ECD_02518 0.19 +0.2 2,632,768 + ECD_02518 0.19 -1.1 2,632,769 - ECD_02518 0.19 -1.0 2,632,777 + ECD_02518 0.20 -2.5 2,632,777 + ECD_02518 0.20 -1.3 2,632,778 - ECD_02518 0.20 -0.2 2,632,778 - ECD_02518 0.20 +0.2 2,632,778 - ECD_02518 0.20 -0.5 2,632,778 - ECD_02518 0.20 +0.3 2,632,797 + ECD_02518 0.21 +0.0 2,632,798 - ECD_02518 0.22 +0.0 2,632,923 + ECD_02518 0.31 +0.7 2,632,951 + ECD_02518 0.33 -0.1 2,632,984 + ECD_02518 0.36 +0.0 2,633,032 + ECD_02518 0.40 -0.1 2,633,055 - ECD_02518 0.42 +0.4 2,633,055 - ECD_02518 0.42 +0.3 2,633,055 - ECD_02518 0.42 +0.8 2,633,164 + ECD_02518 0.50 +0.4 2,633,165 - ECD_02518 0.50 -0.2 2,633,184 + ECD_02518 0.52 +0.3 2,633,184 + ECD_02518 0.52 +0.2 2,633,184 + ECD_02518 0.52 -0.9 2,633,185 - ECD_02518 0.52 +0.6 2,633,185 - ECD_02518 0.52 +0.7 2,633,311 - ECD_02518 0.62 +0.5 2,633,375 + ECD_02518 0.67 -0.1 2,633,413 + ECD_02518 0.70 +1.3 2,633,413 + ECD_02518 0.70 +0.2 2,633,413 + ECD_02518 0.70 +1.9 2,633,414 - ECD_02518 0.70 +0.7 2,633,414 - ECD_02518 0.70 +0.0
Or see this region's nucleotide sequence