Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02395 and ECD_02396 are separated by 351 nucleotides ECD_02396 and ECD_02397 are separated by 310 nucleotides ECD_02397 and ECD_02398 are separated by 15 nucleotides
ECD_02395: ECD_02395 - cyclic-di-GMP phosphodiesterase, anaerobic, at 2,491,175 to 2,493,418
_02395
ECD_02396: ECD_02396 - uncharacterized protein, at 2,493,770 to 2,493,961
_02396
ECD_02397: ECD_02397 - outer membrane integrity lipoprotein, at 2,494,272 to 2,494,790
_02397
ECD_02398: ECD_02398 - nalidixic acid resistance protein, putative periplasmic protein, at 2,494,806 to 2,495,345
_02398
Position (kb)
2493
2494 Strain fitness (log2 ratio)
-1
0
1 at 2492.922 kb on - strand, within ECD_02395 at 2493.045 kb on - strand, within ECD_02395 at 2493.047 kb on - strand, within ECD_02395 at 2493.047 kb on - strand, within ECD_02395 at 2493.727 kb on + strand at 2493.731 kb on + strand at 2493.753 kb on - strand at 2493.831 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2494.421 kb on + strand, within ECD_02397 at 2494.421 kb on + strand, within ECD_02397 at 2494.608 kb on - strand, within ECD_02397 at 2494.671 kb on + strand, within ECD_02397 at 2494.740 kb on + strand at 2494.791 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,492,922 - ECD_02395 0.78 -0.3 2,493,045 - ECD_02395 0.83 -0.6 2,493,047 - ECD_02395 0.83 +0.9 2,493,047 - ECD_02395 0.83 +0.1 2,493,727 + -0.2 2,493,731 + -0.1 2,493,753 - -0.6 2,493,831 + ECD_02396 0.32 -0.1 2,493,872 + ECD_02396 0.53 -0.0 2,493,872 + ECD_02396 0.53 -0.4 2,493,872 + ECD_02396 0.53 -0.2 2,494,421 + ECD_02397 0.29 -1.6 2,494,421 + ECD_02397 0.29 -0.7 2,494,608 - ECD_02397 0.65 -1.1 2,494,671 + ECD_02397 0.77 +1.4 2,494,740 + +0.4 2,494,791 + -0.3
Or see this region's nucleotide sequence