Strain Fitness in Escherichia coli BL21 around ECD_02374

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02372 and ECD_02373 are separated by 252 nucleotidesECD_02373 and ECD_02374 overlap by 1 nucleotides ECD_02372: ECD_02372 - peroxiredoxin; thiol peroxidase, thioredoxin-dependent, at 2,464,967 to 2,465,437 _02372 ECD_02373: ECD_02373 - hydrogenase 4, 4Fe-4S subunit, at 2,465,690 to 2,466,307 _02373 ECD_02374: ECD_02374 - hydrogenase 4, membrane subunit, at 2,466,307 to 2,468,325 _02374 Position (kb) 2466 2467 2468 2469Strain fitness (log2 ratio) -1 0 1 2at 2465.439 kb on + strandat 2465.440 kb on - strandat 2465.480 kb on + strandat 2465.481 kb on - strandat 2465.481 kb on - strandat 2465.481 kb on - strandat 2465.725 kb on + strandat 2465.734 kb on + strandat 2465.734 kb on + strandat 2465.734 kb on + strandat 2465.734 kb on + strandat 2465.735 kb on - strandat 2465.735 kb on - strandat 2465.735 kb on - strandat 2465.735 kb on - strandat 2465.738 kb on - strandat 2465.767 kb on + strand, within ECD_02373at 2465.768 kb on - strand, within ECD_02373at 2466.358 kb on - strandat 2466.400 kb on - strandat 2466.400 kb on - strandat 2466.468 kb on - strandat 2466.468 kb on - strandat 2466.610 kb on + strand, within ECD_02374at 2467.052 kb on + strand, within ECD_02374at 2467.053 kb on - strand, within ECD_02374at 2467.064 kb on + strand, within ECD_02374at 2467.068 kb on + strand, within ECD_02374at 2467.181 kb on + strand, within ECD_02374at 2467.181 kb on + strand, within ECD_02374at 2467.181 kb on + strand, within ECD_02374at 2467.181 kb on + strand, within ECD_02374at 2467.181 kb on + strand, within ECD_02374at 2467.181 kb on + strand, within ECD_02374at 2467.182 kb on - strand, within ECD_02374at 2467.182 kb on - strand, within ECD_02374at 2467.532 kb on - strand, within ECD_02374at 2467.532 kb on - strand, within ECD_02374at 2467.597 kb on - strand, within ECD_02374at 2467.666 kb on - strand, within ECD_02374at 2467.722 kb on + strand, within ECD_02374at 2467.742 kb on + strand, within ECD_02374at 2467.742 kb on + strand, within ECD_02374at 2467.763 kb on + strand, within ECD_02374at 2467.766 kb on + strand, within ECD_02374at 2467.810 kb on - strand, within ECD_02374at 2467.884 kb on + strand, within ECD_02374at 2467.904 kb on + strand, within ECD_02374at 2467.920 kb on - strand, within ECD_02374at 2468.097 kb on - strand, within ECD_02374at 2468.116 kb on - strand, within ECD_02374at 2468.238 kb on - strandat 2468.278 kb on + strandat 2468.278 kb on + strandat 2468.279 kb on - strandat 2468.279 kb on - strandat 2468.279 kb on - strandat 2468.279 kb on - strandat 2468.307 kb on - strandat 2468.361 kb on - strandat 2468.361 kb on - strandat 2468.426 kb on - strandat 2468.439 kb on + strandat 2468.440 kb on - strandat 2468.440 kb on - strandat 2468.450 kb on - strandat 2468.530 kb on + strandat 2468.531 kb on - strandat 2468.531 kb on - strandat 2468.533 kb on - strandat 2468.571 kb on + strandat 2468.611 kb on - strandat 2468.614 kb on + strandat 2468.615 kb on - strandat 2468.663 kb on - strandat 2468.845 kb on - strandat 2469.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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2,465,439 + +0.1
2,465,440 - +0.2
2,465,480 + -0.4
2,465,481 - -0.0
2,465,481 - -0.2
2,465,481 - -0.3
2,465,725 + -0.6
2,465,734 + +0.3
2,465,734 + +1.0
2,465,734 + +0.4
2,465,734 + -0.2
2,465,735 - -1.1
2,465,735 - +1.1
2,465,735 - -0.1
2,465,735 - -0.1
2,465,738 - -0.2
2,465,767 + ECD_02373 0.12 +0.1
2,465,768 - ECD_02373 0.13 +0.6
2,466,358 - +0.4
2,466,400 - -0.8
2,466,400 - -1.3
2,466,468 - -1.1
2,466,468 - -0.1
2,466,610 + ECD_02374 0.15 -0.4
2,467,052 + ECD_02374 0.37 -0.7
2,467,053 - ECD_02374 0.37 -0.5
2,467,064 + ECD_02374 0.37 -1.0
2,467,068 + ECD_02374 0.38 +0.2
2,467,181 + ECD_02374 0.43 -0.1
2,467,181 + ECD_02374 0.43 -1.6
2,467,181 + ECD_02374 0.43 +0.9
2,467,181 + ECD_02374 0.43 -0.1
2,467,181 + ECD_02374 0.43 +0.0
2,467,181 + ECD_02374 0.43 -0.6
2,467,182 - ECD_02374 0.43 +1.0
2,467,182 - ECD_02374 0.43 +0.1
2,467,532 - ECD_02374 0.61 -0.8
2,467,532 - ECD_02374 0.61 +0.2
2,467,597 - ECD_02374 0.64 +0.6
2,467,666 - ECD_02374 0.67 +1.0
2,467,722 + ECD_02374 0.70 -0.1
2,467,742 + ECD_02374 0.71 -0.4
2,467,742 + ECD_02374 0.71 +1.8
2,467,763 + ECD_02374 0.72 -0.4
2,467,766 + ECD_02374 0.72 +0.6
2,467,810 - ECD_02374 0.74 -0.8
2,467,884 + ECD_02374 0.78 +0.9
2,467,904 + ECD_02374 0.79 +0.2
2,467,920 - ECD_02374 0.80 -0.1
2,468,097 - ECD_02374 0.89 -0.3
2,468,116 - ECD_02374 0.90 +1.2
2,468,238 - +0.8
2,468,278 + -0.4
2,468,278 + +0.2
2,468,279 - -0.4
2,468,279 - -1.2
2,468,279 - +1.5
2,468,279 - -0.4
2,468,307 - -1.7
2,468,361 - +0.2
2,468,361 - -0.0
2,468,426 - +0.5
2,468,439 + -0.1
2,468,440 - +0.8
2,468,440 - +0.7
2,468,450 - +0.6
2,468,530 + -1.2
2,468,531 - -0.0
2,468,531 - +0.0
2,468,533 - -0.1
2,468,571 + -0.2
2,468,611 - -1.5
2,468,614 + -0.4
2,468,615 - -1.6
2,468,663 - -0.3
2,468,845 - +0.2
2,469,299 - -0.2

Or see this region's nucleotide sequence