Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02151 and ECD_02152 are separated by 73 nucleotides ECD_02152 and ECD_02153 are separated by 4 nucleotides
ECD_02151: ECD_02151 - acetyl-CoA acetyltransferase, at 2,216,470 to 2,217,654
_02151
ECD_02152: ECD_02152 - DUF2135 family protein, putative host defense protein, at 2,217,728 to 2,218,504
_02152
ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158
_02153
Position (kb)
2217
2218
2219 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2216.729 kb on + strand, within ECD_02151 at 2216.836 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.012 kb on - strand, within ECD_02151 at 2217.058 kb on - strand, within ECD_02151 at 2217.557 kb on + strand at 2217.557 kb on + strand at 2217.653 kb on - strand at 2217.770 kb on - strand at 2217.784 kb on + strand at 2217.785 kb on - strand at 2217.785 kb on - strand at 2217.874 kb on - strand, within ECD_02152 at 2217.877 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.997 kb on - strand, within ECD_02152 at 2218.357 kb on - strand, within ECD_02152 at 2218.546 kb on + strand at 2218.671 kb on - strand at 2218.690 kb on - strand, within ECD_02153 at 2218.740 kb on + strand, within ECD_02153 at 2218.745 kb on + strand, within ECD_02153 at 2218.797 kb on + strand, within ECD_02153 at 2218.798 kb on - strand, within ECD_02153 at 2218.874 kb on - strand, within ECD_02153 at 2218.948 kb on + strand, within ECD_02153 at 2218.969 kb on + strand, within ECD_02153 at 2218.969 kb on + strand, within ECD_02153 at 2219.182 kb on + strand, within ECD_02153 at 2219.235 kb on + strand, within ECD_02153 at 2219.282 kb on + strand, within ECD_02153 at 2219.307 kb on - strand, within ECD_02153
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,216,729 + ECD_02151 0.22 -0.1 2,216,836 + ECD_02151 0.31 -0.6 2,217,011 + ECD_02151 0.46 -0.6 2,217,011 + ECD_02151 0.46 -0.5 2,217,012 - ECD_02151 0.46 -1.0 2,217,058 - ECD_02151 0.50 +0.2 2,217,557 + -0.1 2,217,557 + -0.3 2,217,653 - +0.4 2,217,770 - -0.3 2,217,784 + -0.6 2,217,785 - -1.1 2,217,785 - +0.6 2,217,874 - ECD_02152 0.19 -2.7 2,217,877 - ECD_02152 0.19 -1.1 2,217,886 - ECD_02152 0.20 -0.4 2,217,886 - ECD_02152 0.20 +0.0 2,217,997 - ECD_02152 0.35 -2.5 2,218,357 - ECD_02152 0.81 -3.0 2,218,546 + +0.1 2,218,671 - -0.0 2,218,690 - ECD_02153 0.11 +1.0 2,218,740 + ECD_02153 0.14 -0.0 2,218,745 + ECD_02153 0.14 +0.2 2,218,797 + ECD_02153 0.17 +0.6 2,218,798 - ECD_02153 0.18 +0.6 2,218,874 - ECD_02153 0.22 +0.3 2,218,948 + ECD_02153 0.27 -0.7 2,218,969 + ECD_02153 0.28 -0.1 2,218,969 + ECD_02153 0.28 -0.1 2,219,182 + ECD_02153 0.41 +0.3 2,219,235 + ECD_02153 0.44 +2.3 2,219,282 + ECD_02153 0.47 -0.1 2,219,307 - ECD_02153 0.48 -0.2
Or see this region's nucleotide sequence