Strain Fitness in Escherichia coli BL21 around ECD_02152

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02151 and ECD_02152 are separated by 73 nucleotidesECD_02152 and ECD_02153 are separated by 4 nucleotides ECD_02151: ECD_02151 - acetyl-CoA acetyltransferase, at 2,216,470 to 2,217,654 _02151 ECD_02152: ECD_02152 - DUF2135 family protein, putative host defense protein, at 2,217,728 to 2,218,504 _02152 ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158 _02153 Position (kb) 2217 2218 2219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2216.729 kb on + strand, within ECD_02151at 2216.836 kb on + strand, within ECD_02151at 2217.011 kb on + strand, within ECD_02151at 2217.011 kb on + strand, within ECD_02151at 2217.012 kb on - strand, within ECD_02151at 2217.058 kb on - strand, within ECD_02151at 2217.557 kb on + strandat 2217.557 kb on + strandat 2217.653 kb on - strandat 2217.770 kb on - strandat 2217.784 kb on + strandat 2217.785 kb on - strandat 2217.785 kb on - strandat 2217.874 kb on - strand, within ECD_02152at 2217.877 kb on - strand, within ECD_02152at 2217.886 kb on - strand, within ECD_02152at 2217.886 kb on - strand, within ECD_02152at 2217.997 kb on - strand, within ECD_02152at 2218.357 kb on - strand, within ECD_02152at 2218.546 kb on + strandat 2218.671 kb on - strandat 2218.690 kb on - strand, within ECD_02153at 2218.740 kb on + strand, within ECD_02153at 2218.745 kb on + strand, within ECD_02153at 2218.797 kb on + strand, within ECD_02153at 2218.798 kb on - strand, within ECD_02153at 2218.874 kb on - strand, within ECD_02153at 2218.948 kb on + strand, within ECD_02153at 2218.969 kb on + strand, within ECD_02153at 2218.969 kb on + strand, within ECD_02153at 2219.182 kb on + strand, within ECD_02153at 2219.235 kb on + strand, within ECD_02153at 2219.282 kb on + strand, within ECD_02153at 2219.307 kb on - strand, within ECD_02153

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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2,216,729 + ECD_02151 0.22 -0.1
2,216,836 + ECD_02151 0.31 -0.6
2,217,011 + ECD_02151 0.46 -0.6
2,217,011 + ECD_02151 0.46 -0.5
2,217,012 - ECD_02151 0.46 -1.0
2,217,058 - ECD_02151 0.50 +0.2
2,217,557 + -0.1
2,217,557 + -0.3
2,217,653 - +0.4
2,217,770 - -0.3
2,217,784 + -0.6
2,217,785 - -1.1
2,217,785 - +0.6
2,217,874 - ECD_02152 0.19 -2.7
2,217,877 - ECD_02152 0.19 -1.1
2,217,886 - ECD_02152 0.20 -0.4
2,217,886 - ECD_02152 0.20 +0.0
2,217,997 - ECD_02152 0.35 -2.5
2,218,357 - ECD_02152 0.81 -3.0
2,218,546 + +0.1
2,218,671 - -0.0
2,218,690 - ECD_02153 0.11 +1.0
2,218,740 + ECD_02153 0.14 -0.0
2,218,745 + ECD_02153 0.14 +0.2
2,218,797 + ECD_02153 0.17 +0.6
2,218,798 - ECD_02153 0.18 +0.6
2,218,874 - ECD_02153 0.22 +0.3
2,218,948 + ECD_02153 0.27 -0.7
2,218,969 + ECD_02153 0.28 -0.1
2,218,969 + ECD_02153 0.28 -0.1
2,219,182 + ECD_02153 0.41 +0.3
2,219,235 + ECD_02153 0.44 +2.3
2,219,282 + ECD_02153 0.47 -0.1
2,219,307 - ECD_02153 0.48 -0.2

Or see this region's nucleotide sequence