Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01557 and ECD_01558 are separated by 10 nucleotides ECD_01558 and ECD_01559 are separated by 1 nucleotides ECD_01559 and ECD_01560 are separated by 42 nucleotides ECD_01560 and ECD_01561 are separated by 194 nucleotides
ECD_01557: ECD_01557 - S- and N-oxide reductase, A subunit, periplasmic, at 1,605,753 to 1,608,176
_01557
ECD_01558: ECD_01558 - oxidoreductase, Fe-S subunit, at 1,608,187 to 1,608,804
_01558
ECD_01559: ECD_01559 - oxidoreductase, membrane subunit, at 1,608,806 to 1,609,660
_01559
ECD_01560: ECD_01560 - twin-argninine leader-binding protein for DmsA and TorA, at 1,609,703 to 1,610,317
_01560
ECD_01561: ECD_01561 - H(+)/Cl(-) exchange transporter, at 1,610,512 to 1,611,768
_01561
Position (kb) 1608
1609
1610 Strain fitness (log2 ratio) -1
0
1
2 at 1608.605 kb on + strand, within ECD_01558 at 1608.605 kb on + strand, within ECD_01558 at 1608.605 kb on + strand, within ECD_01558 at 1609.252 kb on + strand, within ECD_01559 at 1609.463 kb on + strand, within ECD_01559 at 1609.497 kb on + strand, within ECD_01559 at 1609.564 kb on + strand, within ECD_01559 at 1610.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 1,608,605 + ECD_01558 0.68 +2.1 1,608,605 + ECD_01558 0.68 +0.1 1,608,605 + ECD_01558 0.68 +1.0 1,609,252 + ECD_01559 0.52 -1.3 1,609,463 + ECD_01559 0.77 +1.0 1,609,497 + ECD_01559 0.81 -1.2 1,609,564 + ECD_01559 0.89 +0.2 1,610,487 - -0.2
Or see this region's nucleotide sequence