Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01290 and ECD_01291 are separated by 18 nucleotides ECD_01291 and ECD_01292 are separated by 9 nucleotides ECD_01292 and ECD_01293 overlap by 4 nucleotides
ECD_01290: ECD_01290 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 1,361,329 to 1,362,381
_01290
ECD_01291: ECD_01291 - putative TIM alpha/beta barrel enzyme, at 1,362,400 to 1,363,188
_01291
ECD_01292: ECD_01292 - putative NADH-binding oxidoreductase, at 1,363,198 to 1,364,253
_01292
ECD_01293: ECD_01293 - putative family 65 glycosyl hydrolase, at 1,364,250 to 1,366,517
_01293
Position (kb)
1363
1364
1365 Strain fitness (log2 ratio)
-1
0
1
2 at 1362.322 kb on + strand at 1362.332 kb on - strand at 1362.624 kb on + strand, within ECD_01291 at 1362.920 kb on + strand, within ECD_01291 at 1363.015 kb on - strand, within ECD_01291 at 1363.096 kb on + strand, within ECD_01291 at 1363.106 kb on - strand, within ECD_01291 at 1363.109 kb on + strand, within ECD_01291 at 1363.110 kb on - strand at 1363.114 kb on + strand at 1363.282 kb on + strand at 1363.657 kb on + strand, within ECD_01292 at 1363.658 kb on - strand, within ECD_01292 at 1363.764 kb on + strand, within ECD_01292 at 1363.764 kb on + strand, within ECD_01292 at 1363.783 kb on + strand, within ECD_01292 at 1363.783 kb on + strand, within ECD_01292 at 1363.783 kb on + strand, within ECD_01292 at 1363.888 kb on + strand, within ECD_01292 at 1364.043 kb on + strand, within ECD_01292 at 1364.043 kb on + strand, within ECD_01292 at 1364.144 kb on + strand, within ECD_01292 at 1364.308 kb on - strand at 1364.790 kb on + strand, within ECD_01293 at 1364.865 kb on + strand, within ECD_01293 at 1364.865 kb on + strand, within ECD_01293 at 1364.866 kb on - strand, within ECD_01293 at 1364.897 kb on + strand, within ECD_01293 at 1364.897 kb on + strand, within ECD_01293 at 1364.897 kb on + strand, within ECD_01293 at 1365.039 kb on + strand, within ECD_01293
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 1,362,322 + -0.7 1,362,332 - -0.1 1,362,624 + ECD_01291 0.28 +0.3 1,362,920 + ECD_01291 0.66 +0.7 1,363,015 - ECD_01291 0.78 +0.2 1,363,096 + ECD_01291 0.88 -0.0 1,363,106 - ECD_01291 0.89 -0.3 1,363,109 + ECD_01291 0.90 +0.6 1,363,110 - +0.4 1,363,114 + +1.0 1,363,282 + -0.4 1,363,657 + ECD_01292 0.43 +0.9 1,363,658 - ECD_01292 0.44 +2.2 1,363,764 + ECD_01292 0.54 +0.9 1,363,764 + ECD_01292 0.54 +0.7 1,363,783 + ECD_01292 0.55 -1.0 1,363,783 + ECD_01292 0.55 -0.1 1,363,783 + ECD_01292 0.55 +1.8 1,363,888 + ECD_01292 0.65 -0.5 1,364,043 + ECD_01292 0.80 +0.1 1,364,043 + ECD_01292 0.80 +0.5 1,364,144 + ECD_01292 0.90 -0.6 1,364,308 - -1.2 1,364,790 + ECD_01293 0.24 +0.1 1,364,865 + ECD_01293 0.27 +0.5 1,364,865 + ECD_01293 0.27 -0.6 1,364,866 - ECD_01293 0.27 -0.7 1,364,897 + ECD_01293 0.29 +1.1 1,364,897 + ECD_01293 0.29 +0.5 1,364,897 + ECD_01293 0.29 +1.1 1,365,039 + ECD_01293 0.35 -0.5
Or see this region's nucleotide sequence