Strain Fitness in Escherichia coli BL21 around ECD_01292

Experiment: Bas34

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01290 and ECD_01291 are separated by 18 nucleotidesECD_01291 and ECD_01292 are separated by 9 nucleotidesECD_01292 and ECD_01293 overlap by 4 nucleotides ECD_01290: ECD_01290 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 1,361,329 to 1,362,381 _01290 ECD_01291: ECD_01291 - putative TIM alpha/beta barrel enzyme, at 1,362,400 to 1,363,188 _01291 ECD_01292: ECD_01292 - putative NADH-binding oxidoreductase, at 1,363,198 to 1,364,253 _01292 ECD_01293: ECD_01293 - putative family 65 glycosyl hydrolase, at 1,364,250 to 1,366,517 _01293 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -1 0 1 2at 1362.322 kb on + strandat 1362.332 kb on - strandat 1362.624 kb on + strand, within ECD_01291at 1362.920 kb on + strand, within ECD_01291at 1363.015 kb on - strand, within ECD_01291at 1363.096 kb on + strand, within ECD_01291at 1363.106 kb on - strand, within ECD_01291at 1363.109 kb on + strand, within ECD_01291at 1363.110 kb on - strandat 1363.114 kb on + strandat 1363.282 kb on + strandat 1363.657 kb on + strand, within ECD_01292at 1363.658 kb on - strand, within ECD_01292at 1363.764 kb on + strand, within ECD_01292at 1363.764 kb on + strand, within ECD_01292at 1363.783 kb on + strand, within ECD_01292at 1363.783 kb on + strand, within ECD_01292at 1363.783 kb on + strand, within ECD_01292at 1363.888 kb on + strand, within ECD_01292at 1364.043 kb on + strand, within ECD_01292at 1364.043 kb on + strand, within ECD_01292at 1364.144 kb on + strand, within ECD_01292at 1364.308 kb on - strandat 1364.790 kb on + strand, within ECD_01293at 1364.865 kb on + strand, within ECD_01293at 1364.865 kb on + strand, within ECD_01293at 1364.866 kb on - strand, within ECD_01293at 1364.897 kb on + strand, within ECD_01293at 1364.897 kb on + strand, within ECD_01293at 1364.897 kb on + strand, within ECD_01293at 1365.039 kb on + strand, within ECD_01293

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
remove
1,362,322 + -0.7
1,362,332 - -0.1
1,362,624 + ECD_01291 0.28 +0.3
1,362,920 + ECD_01291 0.66 +0.7
1,363,015 - ECD_01291 0.78 +0.2
1,363,096 + ECD_01291 0.88 -0.0
1,363,106 - ECD_01291 0.89 -0.3
1,363,109 + ECD_01291 0.90 +0.6
1,363,110 - +0.4
1,363,114 + +1.0
1,363,282 + -0.4
1,363,657 + ECD_01292 0.43 +0.9
1,363,658 - ECD_01292 0.44 +2.2
1,363,764 + ECD_01292 0.54 +0.9
1,363,764 + ECD_01292 0.54 +0.7
1,363,783 + ECD_01292 0.55 -1.0
1,363,783 + ECD_01292 0.55 -0.1
1,363,783 + ECD_01292 0.55 +1.8
1,363,888 + ECD_01292 0.65 -0.5
1,364,043 + ECD_01292 0.80 +0.1
1,364,043 + ECD_01292 0.80 +0.5
1,364,144 + ECD_01292 0.90 -0.6
1,364,308 - -1.2
1,364,790 + ECD_01293 0.24 +0.1
1,364,865 + ECD_01293 0.27 +0.5
1,364,865 + ECD_01293 0.27 -0.6
1,364,866 - ECD_01293 0.27 -0.7
1,364,897 + ECD_01293 0.29 +1.1
1,364,897 + ECD_01293 0.29 +0.5
1,364,897 + ECD_01293 0.29 +1.1
1,365,039 + ECD_01293 0.35 -0.5

Or see this region's nucleotide sequence