Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01176 and ECD_01177 are separated by 99 nucleotides ECD_01177 and ECD_01178 are separated by 768 nucleotides
ECD_01176: ECD_01176 - dhaKLM operon transcription activator, at 1,239,214 to 1,241,133
_01176
ECD_01177: ECD_01177 - putative adhesin, at 1,241,233 to 1,244,100
_01177
ECD_01178: ECD_01178 - catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated, at 1,244,869 to 1,245,960
_01178
Position (kb)
1241
1242
1243
1244
1245 Strain fitness (log2 ratio)
-1
0
1 at 1240.348 kb on + strand, within ECD_01176 at 1240.370 kb on + strand, within ECD_01176 at 1240.372 kb on + strand, within ECD_01176 at 1241.001 kb on + strand at 1241.542 kb on + strand, within ECD_01177 at 1241.543 kb on - strand, within ECD_01177 at 1241.569 kb on - strand, within ECD_01177 at 1241.596 kb on - strand, within ECD_01177 at 1241.619 kb on - strand, within ECD_01177 at 1241.895 kb on - strand, within ECD_01177 at 1241.906 kb on - strand, within ECD_01177 at 1241.906 kb on - strand, within ECD_01177 at 1242.419 kb on - strand, within ECD_01177 at 1242.468 kb on + strand, within ECD_01177 at 1242.511 kb on - strand, within ECD_01177 at 1242.777 kb on + strand, within ECD_01177 at 1242.783 kb on + strand, within ECD_01177 at 1242.815 kb on + strand, within ECD_01177 at 1242.859 kb on - strand, within ECD_01177 at 1242.864 kb on + strand, within ECD_01177 at 1243.080 kb on - strand, within ECD_01177 at 1243.252 kb on + strand, within ECD_01177 at 1243.370 kb on - strand, within ECD_01177 at 1243.473 kb on - strand, within ECD_01177 at 1243.536 kb on - strand, within ECD_01177 at 1243.556 kb on - strand, within ECD_01177 at 1243.658 kb on - strand, within ECD_01177 at 1244.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 1,240,348 + ECD_01176 0.59 -0.2 1,240,370 + ECD_01176 0.60 -0.1 1,240,372 + ECD_01176 0.60 -0.5 1,241,001 + -0.3 1,241,542 + ECD_01177 0.11 +0.3 1,241,543 - ECD_01177 0.11 +0.2 1,241,569 - ECD_01177 0.12 +0.8 1,241,596 - ECD_01177 0.13 +0.5 1,241,619 - ECD_01177 0.13 -0.4 1,241,895 - ECD_01177 0.23 -0.1 1,241,906 - ECD_01177 0.23 -0.4 1,241,906 - ECD_01177 0.23 +1.4 1,242,419 - ECD_01177 0.41 -0.4 1,242,468 + ECD_01177 0.43 +0.3 1,242,511 - ECD_01177 0.45 +0.0 1,242,777 + ECD_01177 0.54 -0.2 1,242,783 + ECD_01177 0.54 +0.0 1,242,815 + ECD_01177 0.55 -0.9 1,242,859 - ECD_01177 0.57 -0.9 1,242,864 + ECD_01177 0.57 -0.0 1,243,080 - ECD_01177 0.64 -1.5 1,243,252 + ECD_01177 0.70 +0.1 1,243,370 - ECD_01177 0.75 -0.8 1,243,473 - ECD_01177 0.78 +0.6 1,243,536 - ECD_01177 0.80 -0.1 1,243,556 - ECD_01177 0.81 -0.4 1,243,658 - ECD_01177 0.85 -1.3 1,244,110 - +1.3
Or see this region's nucleotide sequence