Strain Fitness in Escherichia coli BL21 around ECD_01170

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01168 and ECD_01169 are separated by 1 nucleotidesECD_01169 and ECD_01170 are separated by 200 nucleotidesECD_01170 and ECD_01171 are separated by 177 nucleotidesECD_01171 and ECD_01172 are separated by 78 nucleotides ECD_01168: ECD_01168 - lytic murein endotransglycosylase E, at 1,231,328 to 1,231,939 _01168 ECD_01169: ECD_01169 - flagellar velocity braking protein, c-di-GMP-regulated, at 1,231,941 to 1,232,675 _01169 ECD_01170: ECD_01170 - UPF0410 family putative inner membrane protein, at 1,232,876 to 1,233,130 _01170 ECD_01171: ECD_01171 - uncharacterized protein, at 1,233,308 to 1,233,748 _01171 ECD_01172: ECD_01172 - periplasmic trehalase, at 1,233,827 to 1,235,524 _01172 Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -1 0 1at 1231.907 kb on + strandat 1231.994 kb on + strandat 1233.676 kb on + strand, within ECD_01171

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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1,231,907 + -0.2
1,231,994 + -0.7
1,233,676 + ECD_01171 0.83 -0.2

Or see this region's nucleotide sequence