Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00809 and ECD_00810 are separated by 40 nucleotides ECD_00810 and ECD_00811 are separated by 85 nucleotides ECD_00811 and ECD_00812 overlap by 1 nucleotides
ECD_00809: ECD_00809 - multidrug efflux system protein, at 867,592 to 868,824
_00809
ECD_00810: ECD_00810 - uncharacterized protein, at 868,865 to 869,149
_00810
ECD_00811: ECD_00811 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 869,235 to 870,050
_00811
ECD_00812: ECD_00812 - putative drug efflux MFS transporter, inner membrane protein, at 870,050 to 871,258
_00812
Position (kb) 868
869
870 Strain fitness (log2 ratio) -2
-1
0
1
2 at 867.941 kb on + strand, within ECD_00809 at 868.055 kb on + strand, within ECD_00809 at 868.186 kb on - strand, within ECD_00809 at 868.187 kb on + strand, within ECD_00809 at 868.226 kb on - strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.227 kb on + strand, within ECD_00809 at 868.228 kb on - strand, within ECD_00809 at 868.354 kb on + strand, within ECD_00809 at 868.355 kb on - strand, within ECD_00809 at 868.458 kb on + strand, within ECD_00809 at 868.532 kb on + strand, within ECD_00809 at 868.533 kb on - strand, within ECD_00809 at 868.550 kb on + strand, within ECD_00809 at 868.554 kb on + strand, within ECD_00809 at 868.866 kb on + strand at 868.913 kb on + strand, within ECD_00810 at 868.913 kb on + strand, within ECD_00810 at 868.936 kb on - strand, within ECD_00810 at 868.936 kb on - strand, within ECD_00810 at 868.977 kb on + strand, within ECD_00810 at 868.978 kb on - strand, within ECD_00810 at 869.478 kb on - strand, within ECD_00811 at 869.534 kb on + strand, within ECD_00811 at 869.535 kb on - strand, within ECD_00811 at 869.610 kb on - strand, within ECD_00811 at 869.619 kb on - strand, within ECD_00811 at 870.113 kb on - strand at 870.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 867,941 + ECD_00809 0.28 -0.6 868,055 + ECD_00809 0.38 -0.6 868,186 - ECD_00809 0.48 -1.4 868,187 + ECD_00809 0.48 +0.5 868,226 - ECD_00809 0.51 -2.1 868,227 + ECD_00809 0.52 +0.6 868,227 + ECD_00809 0.52 -0.0 868,227 + ECD_00809 0.52 -0.2 868,227 + ECD_00809 0.52 +0.0 868,228 - ECD_00809 0.52 -0.6 868,354 + ECD_00809 0.62 +0.1 868,355 - ECD_00809 0.62 -0.7 868,458 + ECD_00809 0.70 +0.3 868,532 + ECD_00809 0.76 -0.1 868,533 - ECD_00809 0.76 -0.7 868,550 + ECD_00809 0.78 -1.2 868,554 + ECD_00809 0.78 +1.1 868,866 + -0.2 868,913 + ECD_00810 0.17 -0.4 868,913 + ECD_00810 0.17 +0.4 868,936 - ECD_00810 0.25 -1.6 868,936 - ECD_00810 0.25 -1.0 868,977 + ECD_00810 0.39 +1.5 868,978 - ECD_00810 0.40 +0.7 869,478 - ECD_00811 0.30 +0.8 869,534 + ECD_00811 0.37 -0.4 869,535 - ECD_00811 0.37 +2.3 869,610 - ECD_00811 0.46 -0.4 869,619 - ECD_00811 0.47 +1.5 870,113 - +0.2 870,138 - -1.6
Or see this region's nucleotide sequence