Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00788 and ECD_00789 are separated by 151 nucleotides ECD_00789 and ECD_00790 are separated by 145 nucleotides
ECD_00788: ECD_00788 - DUF1479 family protein, at 841,715 to 842,980
_00788
ECD_00789: ECD_00789 - sugar phosphatase; fructose-1-P/ribose-5-P/glucose-6-P phosphatase, at 843,132 to 843,947
_00789
ECD_00790: ECD_00790 - putative pyruvate formate lyase, at 844,093 to 846,525
_00790
Position (kb) 843
844 Strain fitness (log2 ratio) -1
0
1 at 842.245 kb on - strand, within ECD_00788 at 842.287 kb on - strand, within ECD_00788 at 842.609 kb on - strand, within ECD_00788 at 842.655 kb on + strand, within ECD_00788 at 842.656 kb on - strand, within ECD_00788 at 842.682 kb on - strand, within ECD_00788 at 842.759 kb on - strand, within ECD_00788 at 842.972 kb on - strand at 843.362 kb on + strand, within ECD_00789 at 843.374 kb on + strand, within ECD_00789 at 843.379 kb on - strand, within ECD_00789 at 843.389 kb on + strand, within ECD_00789 at 843.390 kb on - strand, within ECD_00789 at 843.514 kb on - strand, within ECD_00789 at 843.610 kb on + strand, within ECD_00789 at 843.610 kb on + strand, within ECD_00789 at 843.611 kb on - strand, within ECD_00789 at 843.657 kb on + strand, within ECD_00789 at 843.794 kb on + strand, within ECD_00789 at 843.802 kb on + strand, within ECD_00789 at 843.805 kb on + strand, within ECD_00789 at 843.833 kb on + strand, within ECD_00789 at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.948 kb on - strand at 843.986 kb on + strand at 843.986 kb on + strand at 844.101 kb on + strand at 844.101 kb on + strand at 844.101 kb on + strand at 844.101 kb on + strand at 844.102 kb on - strand at 844.102 kb on - strand at 844.102 kb on - strand at 844.102 kb on - strand at 844.102 kb on - strand at 844.166 kb on + strand at 844.184 kb on - strand at 844.270 kb on - strand at 844.504 kb on - strand, within ECD_00790 at 844.556 kb on + strand, within ECD_00790 at 844.557 kb on - strand, within ECD_00790 at 844.593 kb on + strand, within ECD_00790 at 844.619 kb on + strand, within ECD_00790 at 844.619 kb on + strand, within ECD_00790 at 844.620 kb on - strand, within ECD_00790 at 844.620 kb on - strand, within ECD_00790 at 844.882 kb on - strand, within ECD_00790
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 842,245 - ECD_00788 0.42 +0.1 842,287 - ECD_00788 0.45 -0.3 842,609 - ECD_00788 0.71 +0.4 842,655 + ECD_00788 0.74 +0.9 842,656 - ECD_00788 0.74 -0.7 842,682 - ECD_00788 0.76 -0.3 842,759 - ECD_00788 0.82 -1.1 842,972 - -0.4 843,362 + ECD_00789 0.28 -1.2 843,374 + ECD_00789 0.30 +0.1 843,379 - ECD_00789 0.30 -0.4 843,389 + ECD_00789 0.31 -1.6 843,390 - ECD_00789 0.32 -0.5 843,514 - ECD_00789 0.47 +0.2 843,610 + ECD_00789 0.59 -0.3 843,610 + ECD_00789 0.59 -0.2 843,611 - ECD_00789 0.59 -0.8 843,657 + ECD_00789 0.64 -0.4 843,794 + ECD_00789 0.81 +0.2 843,802 + ECD_00789 0.82 -0.1 843,805 + ECD_00789 0.82 -0.5 843,833 + ECD_00789 0.86 +0.3 843,947 + +0.9 843,947 + +0.6 843,947 + +0.6 843,947 + -0.3 843,948 - -1.6 843,986 + +0.8 843,986 + +0.1 844,101 + +0.6 844,101 + +0.2 844,101 + +0.9 844,101 + -0.6 844,102 - -0.9 844,102 - +0.4 844,102 - +0.4 844,102 - +1.4 844,102 - +0.1 844,166 + +0.7 844,184 - +0.2 844,270 - +1.2 844,504 - ECD_00790 0.17 +0.6 844,556 + ECD_00790 0.19 +1.0 844,557 - ECD_00790 0.19 -0.2 844,593 + ECD_00790 0.21 -0.2 844,619 + ECD_00790 0.22 +0.7 844,619 + ECD_00790 0.22 +0.6 844,620 - ECD_00790 0.22 +0.2 844,620 - ECD_00790 0.22 -0.5 844,882 - ECD_00790 0.32 +1.3
Or see this region's nucleotide sequence