Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00466 and ECD_00467 are separated by 21 nucleotides ECD_00467 and ECD_00468 are separated by 316 nucleotides
ECD_00466: ECD_00466 - allantoate amidohydrolase, at 513,202 to 514,437
_00466
ECD_00467: ECD_00467 - ureidoglycolate dehydrogenase, at 514,459 to 515,508
_00467
ECD_00468: ECD_00468 - putative NAD(P)-binding acyl-CoA synthetase, at 515,825 to 517,492
_00468
Position (kb) 514
515
516 Strain fitness (log2 ratio) -1
0
1 at 513.490 kb on - strand, within ECD_00466 at 513.571 kb on - strand, within ECD_00466 at 513.790 kb on - strand, within ECD_00466 at 513.790 kb on - strand, within ECD_00466 at 513.889 kb on - strand, within ECD_00466 at 514.041 kb on - strand, within ECD_00466 at 514.090 kb on - strand, within ECD_00466 at 514.090 kb on - strand, within ECD_00466 at 514.252 kb on + strand, within ECD_00466 at 514.253 kb on - strand, within ECD_00466 at 514.771 kb on + strand, within ECD_00467 at 514.783 kb on + strand, within ECD_00467 at 514.867 kb on + strand, within ECD_00467 at 514.932 kb on + strand, within ECD_00467 at 514.932 kb on + strand, within ECD_00467 at 514.932 kb on + strand, within ECD_00467 at 514.932 kb on + strand, within ECD_00467 at 514.933 kb on - strand, within ECD_00467 at 514.996 kb on - strand, within ECD_00467 at 515.406 kb on - strand at 515.551 kb on - strand at 516.209 kb on + strand, within ECD_00468 at 516.302 kb on - strand, within ECD_00468 at 516.352 kb on + strand, within ECD_00468 at 516.353 kb on - strand, within ECD_00468 at 516.485 kb on - strand, within ECD_00468
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 513,490 - ECD_00466 0.23 +0.4 513,571 - ECD_00466 0.30 -0.8 513,790 - ECD_00466 0.48 +0.7 513,790 - ECD_00466 0.48 +0.4 513,889 - ECD_00466 0.56 +0.0 514,041 - ECD_00466 0.68 -1.1 514,090 - ECD_00466 0.72 -1.1 514,090 - ECD_00466 0.72 +0.3 514,252 + ECD_00466 0.85 +0.7 514,253 - ECD_00466 0.85 +0.4 514,771 + ECD_00467 0.30 +0.9 514,783 + ECD_00467 0.31 -0.4 514,867 + ECD_00467 0.39 +0.3 514,932 + ECD_00467 0.45 -0.2 514,932 + ECD_00467 0.45 +0.4 514,932 + ECD_00467 0.45 +0.9 514,932 + ECD_00467 0.45 +0.9 514,933 - ECD_00467 0.45 +0.4 514,996 - ECD_00467 0.51 +0.7 515,406 - -0.2 515,551 - +0.6 516,209 + ECD_00468 0.23 -0.1 516,302 - ECD_00468 0.29 +0.2 516,352 + ECD_00468 0.32 -0.4 516,353 - ECD_00468 0.32 +0.4 516,485 - ECD_00468 0.40 +0.0
Or see this region's nucleotide sequence