Strain Fitness in Escherichia coli BL21 around ECD_03094

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03092 and ECD_03093 are separated by 193 nucleotidesECD_03093 and ECD_03094 are separated by 153 nucleotidesECD_03094 and ECD_03095 are separated by 89 nucleotides ECD_03092: ECD_03092 - divisome ATPase, at 3,240,033 to 3,241,160 _03092 ECD_03093: ECD_03093 - DUF1043 family inner membrane-anchored protein, at 3,241,354 to 3,241,752 _03093 ECD_03094: ECD_03094 - serine endoprotease, periplasmic, at 3,241,906 to 3,243,273 _03094 ECD_03095: ECD_03095 - serine endoprotease, periplasmic, at 3,243,363 to 3,244,430 _03095 Position (kb) 3241 3242 3243 3244Strain fitness (log2 ratio) -1 0 1 2at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.940 kb on - strand, within ECD_03092at 3241.038 kb on - strand, within ECD_03092at 3241.038 kb on - strand, within ECD_03092at 3241.059 kb on - strandat 3241.059 kb on - strandat 3241.241 kb on - strandat 3241.279 kb on + strandat 3241.279 kb on + strandat 3241.279 kb on + strandat 3241.279 kb on + strandat 3241.280 kb on - strandat 3241.280 kb on - strandat 3241.287 kb on + strandat 3241.288 kb on - strandat 3241.288 kb on - strandat 3241.366 kb on + strandat 3241.373 kb on + strandat 3241.476 kb on + strand, within ECD_03093at 3241.573 kb on + strand, within ECD_03093at 3241.750 kb on + strandat 3241.805 kb on - strandat 3241.811 kb on + strandat 3241.812 kb on - strandat 3241.812 kb on - strandat 3241.890 kb on + strandat 3241.937 kb on + strandat 3241.943 kb on + strandat 3241.943 kb on + strandat 3242.206 kb on - strand, within ECD_03094at 3242.238 kb on + strand, within ECD_03094at 3242.260 kb on - strand, within ECD_03094at 3242.471 kb on + strand, within ECD_03094at 3242.472 kb on - strand, within ECD_03094at 3242.561 kb on + strand, within ECD_03094at 3242.561 kb on + strand, within ECD_03094at 3242.580 kb on - strand, within ECD_03094at 3242.652 kb on + strand, within ECD_03094at 3242.653 kb on - strand, within ECD_03094at 3242.842 kb on - strand, within ECD_03094at 3242.844 kb on + strand, within ECD_03094at 3242.844 kb on + strand, within ECD_03094at 3242.847 kb on + strand, within ECD_03094at 3242.874 kb on + strand, within ECD_03094at 3242.967 kb on - strand, within ECD_03094at 3243.060 kb on - strand, within ECD_03094at 3243.060 kb on - strand, within ECD_03094at 3243.078 kb on + strand, within ECD_03094at 3243.078 kb on + strand, within ECD_03094at 3243.081 kb on + strand, within ECD_03094at 3243.082 kb on - strand, within ECD_03094at 3243.193 kb on - strandat 3243.236 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.256 kb on + strandat 3243.257 kb on - strandat 3243.314 kb on + strandat 3243.324 kb on + strandat 3243.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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3,240,935 + ECD_03092 0.80 +0.2
3,240,935 + ECD_03092 0.80 -0.5
3,240,935 + ECD_03092 0.80 -1.6
3,240,935 + ECD_03092 0.80 -0.6
3,240,935 + ECD_03092 0.80 -0.9
3,240,935 + ECD_03092 0.80 +0.2
3,240,935 + ECD_03092 0.80 -0.5
3,240,935 + ECD_03092 0.80 -0.5
3,240,935 + ECD_03092 0.80 +0.4
3,240,936 - ECD_03092 0.80 -1.0
3,240,936 - ECD_03092 0.80 -0.3
3,240,936 - ECD_03092 0.80 +0.2
3,240,936 - ECD_03092 0.80 -0.7
3,240,936 - ECD_03092 0.80 -0.1
3,240,936 - ECD_03092 0.80 -0.7
3,240,937 + ECD_03092 0.80 +0.0
3,240,937 + ECD_03092 0.80 -0.1
3,240,937 + ECD_03092 0.80 +0.4
3,240,937 + ECD_03092 0.80 +0.8
3,240,937 + ECD_03092 0.80 +0.3
3,240,937 + ECD_03092 0.80 -0.1
3,240,937 + ECD_03092 0.80 -0.2
3,240,937 + ECD_03092 0.80 +0.5
3,240,937 + ECD_03092 0.80 +1.8
3,240,937 + ECD_03092 0.80 -0.3
3,240,937 + ECD_03092 0.80 -0.8
3,240,938 - ECD_03092 0.80 +0.7
3,240,938 - ECD_03092 0.80 +0.1
3,240,938 - ECD_03092 0.80 -0.7
3,240,938 - ECD_03092 0.80 +0.1
3,240,938 - ECD_03092 0.80 -0.6
3,240,938 - ECD_03092 0.80 +0.4
3,240,938 - ECD_03092 0.80 +0.8
3,240,938 - ECD_03092 0.80 -0.0
3,240,938 - ECD_03092 0.80 -0.7
3,240,939 + ECD_03092 0.80 -0.7
3,240,939 + ECD_03092 0.80 +0.1
3,240,939 + ECD_03092 0.80 +0.8
3,240,939 + ECD_03092 0.80 +0.2
3,240,939 + ECD_03092 0.80 +0.9
3,240,939 + ECD_03092 0.80 +0.7
3,240,940 - ECD_03092 0.80 -0.5
3,241,038 - ECD_03092 0.89 -1.0
3,241,038 - ECD_03092 0.89 +0.8
3,241,059 - +0.5
3,241,059 - -0.1
3,241,241 - +1.4
3,241,279 + +0.4
3,241,279 + -0.1
3,241,279 + +0.2
3,241,279 + -0.1
3,241,280 - -0.4
3,241,280 - -0.6
3,241,287 + +0.2
3,241,288 - +0.2
3,241,288 - -0.9
3,241,366 + -0.6
3,241,373 + -0.7
3,241,476 + ECD_03093 0.31 -0.3
3,241,573 + ECD_03093 0.55 +0.2
3,241,750 + +0.0
3,241,805 - +1.3
3,241,811 + +0.9
3,241,812 - -0.9
3,241,812 - -0.3
3,241,890 + -0.2
3,241,937 + +0.7
3,241,943 + +0.3
3,241,943 + -0.3
3,242,206 - ECD_03094 0.22 +0.5
3,242,238 + ECD_03094 0.24 +0.3
3,242,260 - ECD_03094 0.26 +0.8
3,242,471 + ECD_03094 0.41 +0.5
3,242,472 - ECD_03094 0.41 +0.4
3,242,561 + ECD_03094 0.48 -1.0
3,242,561 + ECD_03094 0.48 -0.6
3,242,580 - ECD_03094 0.49 +0.8
3,242,652 + ECD_03094 0.55 -0.1
3,242,653 - ECD_03094 0.55 +0.3
3,242,842 - ECD_03094 0.68 +0.4
3,242,844 + ECD_03094 0.69 +0.3
3,242,844 + ECD_03094 0.69 -0.2
3,242,847 + ECD_03094 0.69 +1.3
3,242,874 + ECD_03094 0.71 +0.6
3,242,967 - ECD_03094 0.78 +0.4
3,243,060 - ECD_03094 0.84 -0.6
3,243,060 - ECD_03094 0.84 +0.3
3,243,078 + ECD_03094 0.86 +0.8
3,243,078 + ECD_03094 0.86 +1.8
3,243,081 + ECD_03094 0.86 -0.2
3,243,082 - ECD_03094 0.86 +0.2
3,243,193 - -0.4
3,243,236 + +0.6
3,243,256 + -0.1
3,243,256 + -0.2
3,243,256 + -0.3
3,243,256 + +1.7
3,243,256 + -0.1
3,243,257 - -0.2
3,243,314 + +1.4
3,243,324 + -0.3
3,243,379 + +1.6

Or see this region's nucleotide sequence