Strain Fitness in Escherichia coli BL21 around ECD_02355

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02354 and ECD_02355 are separated by 288 nucleotidesECD_02355 and ECD_02356 are separated by 19 nucleotides ECD_02354: ECD_02354 - malic enzyme: putative oxidoreductase/phosphotransacetylase, at 2,440,587 to 2,442,866 _02354 ECD_02355: ECD_02355 - transaldolase A, at 2,443,155 to 2,444,105 _02355 ECD_02356: ECD_02356 - transketolase 2, thiamine triphosphate-binding, at 2,444,125 to 2,446,128 _02356 Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -1 0 1at 2442.224 kb on + strand, within ECD_02354at 2442.225 kb on - strand, within ECD_02354at 2442.434 kb on - strand, within ECD_02354at 2442.550 kb on - strand, within ECD_02354at 2442.648 kb on - strandat 2442.899 kb on - strandat 2442.943 kb on - strandat 2442.946 kb on - strandat 2442.946 kb on - strandat 2442.946 kb on - strandat 2442.946 kb on - strandat 2442.997 kb on - strandat 2443.040 kb on + strandat 2443.285 kb on + strand, within ECD_02355at 2443.294 kb on - strand, within ECD_02355at 2443.304 kb on - strand, within ECD_02355at 2443.602 kb on - strand, within ECD_02355at 2443.604 kb on + strand, within ECD_02355at 2443.779 kb on + strand, within ECD_02355at 2443.779 kb on + strand, within ECD_02355at 2443.785 kb on + strand, within ECD_02355at 2443.790 kb on + strand, within ECD_02355at 2443.790 kb on + strand, within ECD_02355at 2443.791 kb on - strand, within ECD_02355at 2443.930 kb on + strand, within ECD_02355at 2443.934 kb on + strand, within ECD_02355at 2443.934 kb on + strand, within ECD_02355at 2444.101 kb on + strandat 2444.102 kb on - strandat 2444.122 kb on + strandat 2444.122 kb on + strandat 2444.123 kb on - strandat 2444.123 kb on - strandat 2444.124 kb on + strandat 2444.124 kb on + strandat 2444.124 kb on + strandat 2444.125 kb on - strandat 2444.125 kb on - strandat 2444.284 kb on + strandat 2444.285 kb on - strandat 2444.285 kb on - strandat 2444.345 kb on + strand, within ECD_02356at 2444.346 kb on - strand, within ECD_02356at 2444.346 kb on - strand, within ECD_02356at 2444.436 kb on + strand, within ECD_02356at 2444.514 kb on + strand, within ECD_02356at 2444.569 kb on + strand, within ECD_02356at 2444.570 kb on - strand, within ECD_02356at 2444.889 kb on + strand, within ECD_02356at 2444.889 kb on + strand, within ECD_02356

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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2,442,224 + ECD_02354 0.72 -0.6
2,442,225 - ECD_02354 0.72 -0.2
2,442,434 - ECD_02354 0.81 -0.6
2,442,550 - ECD_02354 0.86 -0.4
2,442,648 - -0.2
2,442,899 - +0.9
2,442,943 - -0.2
2,442,946 - -0.3
2,442,946 - +0.9
2,442,946 - +0.3
2,442,946 - +0.5
2,442,997 - -0.5
2,443,040 + +0.7
2,443,285 + ECD_02355 0.14 +0.2
2,443,294 - ECD_02355 0.15 -0.1
2,443,304 - ECD_02355 0.16 +0.3
2,443,602 - ECD_02355 0.47 +0.8
2,443,604 + ECD_02355 0.47 +0.2
2,443,779 + ECD_02355 0.66 +1.2
2,443,779 + ECD_02355 0.66 +0.5
2,443,785 + ECD_02355 0.66 +0.3
2,443,790 + ECD_02355 0.67 +1.2
2,443,790 + ECD_02355 0.67 +0.2
2,443,791 - ECD_02355 0.67 -0.3
2,443,930 + ECD_02355 0.81 +0.3
2,443,934 + ECD_02355 0.82 -0.6
2,443,934 + ECD_02355 0.82 -0.5
2,444,101 + -0.1
2,444,102 - -0.8
2,444,122 + -1.1
2,444,122 + +0.1
2,444,123 - +0.0
2,444,123 - -0.3
2,444,124 + -0.1
2,444,124 + +0.2
2,444,124 + -1.1
2,444,125 - +1.0
2,444,125 - +0.2
2,444,284 + -0.3
2,444,285 - -0.2
2,444,285 - +0.5
2,444,345 + ECD_02356 0.11 -0.2
2,444,346 - ECD_02356 0.11 -0.0
2,444,346 - ECD_02356 0.11 -0.2
2,444,436 + ECD_02356 0.16 +0.5
2,444,514 + ECD_02356 0.19 +0.4
2,444,569 + ECD_02356 0.22 -0.4
2,444,570 - ECD_02356 0.22 +0.8
2,444,889 + ECD_02356 0.38 +0.7
2,444,889 + ECD_02356 0.38 +0.7

Or see this region's nucleotide sequence