Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02354 and ECD_02355 are separated by 288 nucleotides ECD_02355 and ECD_02356 are separated by 19 nucleotides
ECD_02354: ECD_02354 - malic enzyme: putative oxidoreductase/phosphotransacetylase, at 2,440,587 to 2,442,866
_02354
ECD_02355: ECD_02355 - transaldolase A, at 2,443,155 to 2,444,105
_02355
ECD_02356: ECD_02356 - transketolase 2, thiamine triphosphate-binding, at 2,444,125 to 2,446,128
_02356
Position (kb)
2443
2444
2445 Strain fitness (log2 ratio)
-1
0
1 at 2442.224 kb on + strand, within ECD_02354 at 2442.225 kb on - strand, within ECD_02354 at 2442.434 kb on - strand, within ECD_02354 at 2442.550 kb on - strand, within ECD_02354 at 2442.648 kb on - strand at 2442.899 kb on - strand at 2442.943 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.997 kb on - strand at 2443.040 kb on + strand at 2443.285 kb on + strand, within ECD_02355 at 2443.294 kb on - strand, within ECD_02355 at 2443.304 kb on - strand, within ECD_02355 at 2443.602 kb on - strand, within ECD_02355 at 2443.604 kb on + strand, within ECD_02355 at 2443.779 kb on + strand, within ECD_02355 at 2443.779 kb on + strand, within ECD_02355 at 2443.785 kb on + strand, within ECD_02355 at 2443.790 kb on + strand, within ECD_02355 at 2443.790 kb on + strand, within ECD_02355 at 2443.791 kb on - strand, within ECD_02355 at 2443.930 kb on + strand, within ECD_02355 at 2443.934 kb on + strand, within ECD_02355 at 2443.934 kb on + strand, within ECD_02355 at 2444.101 kb on + strand at 2444.102 kb on - strand at 2444.122 kb on + strand at 2444.122 kb on + strand at 2444.123 kb on - strand at 2444.123 kb on - strand at 2444.124 kb on + strand at 2444.124 kb on + strand at 2444.124 kb on + strand at 2444.125 kb on - strand at 2444.125 kb on - strand at 2444.284 kb on + strand at 2444.285 kb on - strand at 2444.285 kb on - strand at 2444.345 kb on + strand, within ECD_02356 at 2444.346 kb on - strand, within ECD_02356 at 2444.346 kb on - strand, within ECD_02356 at 2444.436 kb on + strand, within ECD_02356 at 2444.514 kb on + strand, within ECD_02356 at 2444.569 kb on + strand, within ECD_02356 at 2444.570 kb on - strand, within ECD_02356 at 2444.889 kb on + strand, within ECD_02356 at 2444.889 kb on + strand, within ECD_02356
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,442,224 + ECD_02354 0.72 -0.6 2,442,225 - ECD_02354 0.72 -0.2 2,442,434 - ECD_02354 0.81 -0.6 2,442,550 - ECD_02354 0.86 -0.4 2,442,648 - -0.2 2,442,899 - +0.9 2,442,943 - -0.2 2,442,946 - -0.3 2,442,946 - +0.9 2,442,946 - +0.3 2,442,946 - +0.5 2,442,997 - -0.5 2,443,040 + +0.7 2,443,285 + ECD_02355 0.14 +0.2 2,443,294 - ECD_02355 0.15 -0.1 2,443,304 - ECD_02355 0.16 +0.3 2,443,602 - ECD_02355 0.47 +0.8 2,443,604 + ECD_02355 0.47 +0.2 2,443,779 + ECD_02355 0.66 +1.2 2,443,779 + ECD_02355 0.66 +0.5 2,443,785 + ECD_02355 0.66 +0.3 2,443,790 + ECD_02355 0.67 +1.2 2,443,790 + ECD_02355 0.67 +0.2 2,443,791 - ECD_02355 0.67 -0.3 2,443,930 + ECD_02355 0.81 +0.3 2,443,934 + ECD_02355 0.82 -0.6 2,443,934 + ECD_02355 0.82 -0.5 2,444,101 + -0.1 2,444,102 - -0.8 2,444,122 + -1.1 2,444,122 + +0.1 2,444,123 - +0.0 2,444,123 - -0.3 2,444,124 + -0.1 2,444,124 + +0.2 2,444,124 + -1.1 2,444,125 - +1.0 2,444,125 - +0.2 2,444,284 + -0.3 2,444,285 - -0.2 2,444,285 - +0.5 2,444,345 + ECD_02356 0.11 -0.2 2,444,346 - ECD_02356 0.11 -0.0 2,444,346 - ECD_02356 0.11 -0.2 2,444,436 + ECD_02356 0.16 +0.5 2,444,514 + ECD_02356 0.19 +0.4 2,444,569 + ECD_02356 0.22 -0.4 2,444,570 - ECD_02356 0.22 +0.8 2,444,889 + ECD_02356 0.38 +0.7 2,444,889 + ECD_02356 0.38 +0.7
Or see this region's nucleotide sequence