Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02081 and ECD_02082 are separated by 16 nucleotides ECD_02082 and ECD_02083 are separated by 257 nucleotides ECD_02083 and ECD_02084 are separated by 31 nucleotides
ECD_02081: ECD_02081 - DUF418 family putative inner membrane protein, at 2,136,709 to 2,137,866
_02081
ECD_02082: ECD_02082 - GTP cyclohydrolase I, at 2,137,883 to 2,138,551
_02082
ECD_02083: ECD_02083 - S-formylglutathione hydrolase, at 2,138,809 to 2,139,645
_02083
ECD_02084: ECD_02084 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter, at 2,139,677 to 2,141,668
_02084
Position (kb)
2138
2139
2140 Strain fitness (log2 ratio)
-1
0
1
2 at 2138.607 kb on - strand at 2138.617 kb on - strand at 2138.628 kb on - strand at 2138.729 kb on - strand at 2138.902 kb on - strand, within ECD_02083 at 2139.116 kb on - strand, within ECD_02083 at 2139.161 kb on - strand, within ECD_02083 at 2139.161 kb on - strand, within ECD_02083 at 2139.208 kb on - strand, within ECD_02083 at 2139.267 kb on + strand, within ECD_02083 at 2139.292 kb on + strand, within ECD_02083 at 2139.293 kb on - strand, within ECD_02083 at 2139.367 kb on + strand, within ECD_02083 at 2139.421 kb on + strand, within ECD_02083 at 2139.555 kb on + strand, within ECD_02083 at 2139.580 kb on + strand at 2139.584 kb on - strand at 2139.601 kb on - strand at 2139.726 kb on + strand at 2139.727 kb on - strand at 2139.727 kb on - strand at 2139.732 kb on + strand at 2139.732 kb on + strand at 2139.733 kb on - strand at 2139.733 kb on - strand at 2139.733 kb on - strand at 2139.883 kb on + strand, within ECD_02084 at 2140.017 kb on + strand, within ECD_02084 at 2140.018 kb on - strand, within ECD_02084 at 2140.018 kb on - strand, within ECD_02084 at 2140.024 kb on - strand, within ECD_02084 at 2140.024 kb on - strand, within ECD_02084 at 2140.088 kb on - strand, within ECD_02084 at 2140.115 kb on - strand, within ECD_02084 at 2140.115 kb on - strand, within ECD_02084 at 2140.288 kb on - strand, within ECD_02084 at 2140.288 kb on - strand, within ECD_02084 at 2140.351 kb on + strand, within ECD_02084 at 2140.352 kb on - strand, within ECD_02084 at 2140.391 kb on - strand, within ECD_02084 at 2140.464 kb on + strand, within ECD_02084 at 2140.465 kb on - strand, within ECD_02084
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 2,138,607 - +0.3 2,138,617 - -0.6 2,138,628 - +0.7 2,138,729 - -0.0 2,138,902 - ECD_02083 0.11 +0.6 2,139,116 - ECD_02083 0.37 -0.9 2,139,161 - ECD_02083 0.42 -0.3 2,139,161 - ECD_02083 0.42 +0.1 2,139,208 - ECD_02083 0.48 +0.5 2,139,267 + ECD_02083 0.55 -0.5 2,139,292 + ECD_02083 0.58 +0.8 2,139,293 - ECD_02083 0.58 -0.5 2,139,367 + ECD_02083 0.67 -0.3 2,139,421 + ECD_02083 0.73 -0.1 2,139,555 + ECD_02083 0.89 +0.5 2,139,580 + +0.2 2,139,584 - -1.5 2,139,601 - -0.4 2,139,726 + +0.6 2,139,727 - -0.2 2,139,727 - +0.4 2,139,732 + +0.6 2,139,732 + +1.0 2,139,733 - +1.1 2,139,733 - +0.6 2,139,733 - -0.9 2,139,883 + ECD_02084 0.10 +0.2 2,140,017 + ECD_02084 0.17 +1.1 2,140,018 - ECD_02084 0.17 +0.8 2,140,018 - ECD_02084 0.17 -0.9 2,140,024 - ECD_02084 0.17 +0.6 2,140,024 - ECD_02084 0.17 +0.3 2,140,088 - ECD_02084 0.21 +0.7 2,140,115 - ECD_02084 0.22 -1.7 2,140,115 - ECD_02084 0.22 -0.2 2,140,288 - ECD_02084 0.31 +0.1 2,140,288 - ECD_02084 0.31 +0.0 2,140,351 + ECD_02084 0.34 -0.3 2,140,352 - ECD_02084 0.34 +0.6 2,140,391 - ECD_02084 0.36 +0.2 2,140,464 + ECD_02084 0.40 +2.7 2,140,465 - ECD_02084 0.40 -0.4
Or see this region's nucleotide sequence