Strain Fitness in Escherichia coli BL21 around ECD_01805

Experiment: Bas34

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01804 and ECD_01805 overlap by 32 nucleotidesECD_01805 and ECD_01806 are separated by 79 nucleotides ECD_01804: ECD_01804 - inner membrane PqiA domain protein, at 1,861,983 to 1,863,266 _01804 ECD_01805: ECD_01805 - MCE domain protein, at 1,863,235 to 1,865,868 _01805 ECD_01806: ECD_01806 - 16S rRNA m(5)C1407 methyltransferase, SAM-dependent, at 1,865,948 to 1,867,387 _01806 Position (kb) 1863 1864 1865 1866Strain fitness (log2 ratio) -1 0 1 2at 1862.263 kb on + strand, within ECD_01804at 1862.394 kb on + strand, within ECD_01804at 1862.815 kb on + strand, within ECD_01804at 1862.834 kb on + strand, within ECD_01804at 1862.835 kb on - strand, within ECD_01804at 1862.963 kb on + strand, within ECD_01804at 1863.094 kb on + strand, within ECD_01804at 1863.393 kb on + strandat 1863.493 kb on - strandat 1863.625 kb on + strand, within ECD_01805at 1863.625 kb on + strand, within ECD_01805at 1863.645 kb on + strand, within ECD_01805at 1863.802 kb on + strand, within ECD_01805at 1864.163 kb on + strand, within ECD_01805at 1864.487 kb on + strand, within ECD_01805at 1864.911 kb on + strand, within ECD_01805at 1865.030 kb on + strand, within ECD_01805at 1865.366 kb on + strand, within ECD_01805at 1865.367 kb on - strand, within ECD_01805at 1865.389 kb on - strand, within ECD_01805at 1865.484 kb on + strand, within ECD_01805at 1865.626 kb on + strandat 1865.643 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas34
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1,862,263 + ECD_01804 0.22 +1.8
1,862,394 + ECD_01804 0.32 -0.2
1,862,815 + ECD_01804 0.65 -0.2
1,862,834 + ECD_01804 0.66 +0.2
1,862,835 - ECD_01804 0.66 -0.2
1,862,963 + ECD_01804 0.76 +0.2
1,863,094 + ECD_01804 0.87 -0.6
1,863,393 + +1.2
1,863,493 - -0.5
1,863,625 + ECD_01805 0.15 +0.9
1,863,625 + ECD_01805 0.15 -0.3
1,863,645 + ECD_01805 0.16 +0.0
1,863,802 + ECD_01805 0.22 +1.3
1,864,163 + ECD_01805 0.35 +1.3
1,864,487 + ECD_01805 0.48 -0.9
1,864,911 + ECD_01805 0.64 +0.1
1,865,030 + ECD_01805 0.68 -0.1
1,865,366 + ECD_01805 0.81 +1.2
1,865,367 - ECD_01805 0.81 +0.3
1,865,389 - ECD_01805 0.82 +1.2
1,865,484 + ECD_01805 0.85 -1.1
1,865,626 + +0.4
1,865,643 + +0.0

Or see this region's nucleotide sequence