Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00920 and ECD_00921 are separated by 51 nucleotides ECD_00921 and ECD_00922 overlap by 4 nucleotides ECD_00922 and ECD_00923 are separated by 153 nucleotides
ECD_00920: ECD_00920 - DUF1006 family protein with C-terminal wHTH domain, at 974,479 to 975,711
_00920
ECD_00921: ECD_00921 - peroxide and acid resistance protein, UPF0434 family, at 975,763 to 975,945
_00921
ECD_00922: ECD_00922 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 975,942 to 976,688
_00922
ECD_00923: ECD_00923 - protein kinase-like domain protein, at 976,842 to 977,735
_00923
Position (kb) 975
976 Strain fitness (log2 ratio) -1
0
1 at 974.818 kb on + strand, within ECD_00920 at 974.982 kb on + strand, within ECD_00920 at 975.400 kb on - strand, within ECD_00920 at 975.418 kb on + strand, within ECD_00920 at 975.467 kb on + strand, within ECD_00920 at 975.561 kb on + strand, within ECD_00920 at 975.670 kb on - strand at 975.718 kb on - strand at 975.729 kb on + strand at 975.729 kb on + strand at 976.942 kb on - strand, within ECD_00923
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 974,818 + ECD_00920 0.27 -0.0 974,982 + ECD_00920 0.41 +0.1 975,400 - ECD_00920 0.75 +0.9 975,418 + ECD_00920 0.76 +0.7 975,467 + ECD_00920 0.80 +0.2 975,561 + ECD_00920 0.88 +0.9 975,670 - -0.1 975,718 - +0.5 975,729 + -0.2 975,729 + -1.2 976,942 - ECD_00923 0.11 +0.1
Or see this region's nucleotide sequence