Experiment: Bas34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00052 and ECD_00053 are separated by 77 nucleotides ECD_00053 and ECD_00054 are separated by 6 nucleotides ECD_00054 and ECD_00055 are separated by 2 nucleotides ECD_00055 and ECD_00056 overlap by 4 nucleotides
ECD_00052: ECD_00052 - dihydrofolate reductase, at 54,019 to 54,498
_00052
ECD_00053: ECD_00053 - diadenosine tetraphosphatase, at 54,576 to 55,418
_00053
ECD_00054: ECD_00054 - protein associated with Co2+ and Mg2+ efflux, at 55,425 to 55,802
_00054
ECD_00055: ECD_00055 - 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent, at 55,805 to 56,626
_00055
ECD_00056: ECD_00056 - 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent, at 56,623 to 57,612
_00056
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 54.561 kb on + strand at 54.562 kb on - strand at 54.562 kb on - strand at 54.605 kb on + strand at 54.606 kb on - strand at 54.632 kb on - strand at 54.700 kb on - strand, within ECD_00053 at 54.701 kb on + strand, within ECD_00053 at 54.701 kb on + strand, within ECD_00053 at 54.702 kb on - strand, within ECD_00053 at 54.835 kb on + strand, within ECD_00053 at 54.879 kb on - strand, within ECD_00053 at 54.952 kb on + strand, within ECD_00053 at 54.957 kb on - strand, within ECD_00053 at 54.957 kb on - strand, within ECD_00053 at 55.242 kb on + strand, within ECD_00053 at 55.243 kb on - strand, within ECD_00053 at 55.356 kb on - strand at 55.404 kb on - strand at 55.409 kb on - strand at 55.558 kb on + strand, within ECD_00054 at 55.558 kb on + strand, within ECD_00054 at 55.710 kb on - strand, within ECD_00054 at 55.711 kb on + strand, within ECD_00054 at 55.724 kb on - strand, within ECD_00054 at 55.778 kb on + strand at 55.779 kb on - strand at 55.839 kb on + strand at 56.743 kb on - strand, within ECD_00056
Per-strain Table
Position Strand Gene LocusTag Fraction Bas34 remove 54,561 + +0.4 54,562 - +0.7 54,562 - +0.1 54,605 + +0.1 54,606 - -0.8 54,632 - +0.3 54,700 - ECD_00053 0.15 -0.6 54,701 + ECD_00053 0.15 -0.0 54,701 + ECD_00053 0.15 +0.9 54,702 - ECD_00053 0.15 -0.9 54,835 + ECD_00053 0.31 -1.7 54,879 - ECD_00053 0.36 -1.0 54,952 + ECD_00053 0.45 +0.4 54,957 - ECD_00053 0.45 -0.8 54,957 - ECD_00053 0.45 +0.2 55,242 + ECD_00053 0.79 -1.2 55,243 - ECD_00053 0.79 -0.4 55,356 - -2.0 55,404 - -1.4 55,409 - -0.6 55,558 + ECD_00054 0.35 -1.0 55,558 + ECD_00054 0.35 -0.8 55,710 - ECD_00054 0.75 +0.3 55,711 + ECD_00054 0.76 -0.5 55,724 - ECD_00054 0.79 +0.2 55,778 + +0.5 55,779 - +0.0 55,839 + -0.8 56,743 - ECD_00056 0.12 +0.4
Or see this region's nucleotide sequence