Strain Fitness in Pseudomonas sp. RS175 around PFR28_04706

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04705 and PFR28_04706 are separated by 133 nucleotidesPFR28_04706 and PFR28_04707 are separated by 182 nucleotidesPFR28_04707 and PFR28_04708 are separated by 6 nucleotidesPFR28_04708 and PFR28_04709 are separated by 140 nucleotides PFR28_04705: PFR28_04705 - hypothetical protein, at 5,363,998 to 5,365,020 _04705 PFR28_04706: PFR28_04706 - hypothetical protein, at 5,365,154 to 5,365,567 _04706 PFR28_04707: PFR28_04707 - hypothetical protein, at 5,365,750 to 5,366,175 _04707 PFR28_04708: PFR28_04708 - hypothetical protein, at 5,366,182 to 5,366,415 _04708 PFR28_04709: PFR28_04709 - Peroxiredoxin OsmC, at 5,366,556 to 5,366,987 _04709 Position (kb) 5365 5366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.158 kb on + strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.159 kb on - strand, within PFR28_04705at 5364.200 kb on + strand, within PFR28_04705at 5364.200 kb on + strand, within PFR28_04705at 5364.200 kb on + strand, within PFR28_04705at 5364.218 kb on + strand, within PFR28_04705at 5364.218 kb on + strand, within PFR28_04705at 5364.218 kb on + strand, within PFR28_04705at 5364.219 kb on - strand, within PFR28_04705at 5364.219 kb on - strand, within PFR28_04705at 5364.219 kb on - strand, within PFR28_04705at 5364.219 kb on - strand, within PFR28_04705at 5364.219 kb on - strand, within PFR28_04705at 5364.219 kb on - strand, within PFR28_04705at 5364.257 kb on + strand, within PFR28_04705at 5364.257 kb on + strand, within PFR28_04705at 5364.258 kb on - strand, within PFR28_04705at 5364.258 kb on - strand, within PFR28_04705at 5364.329 kb on + strand, within PFR28_04705at 5364.329 kb on + strand, within PFR28_04705at 5364.330 kb on - strand, within PFR28_04705at 5364.330 kb on - strand, within PFR28_04705at 5364.330 kb on - strand, within PFR28_04705at 5364.330 kb on - strand, within PFR28_04705at 5364.330 kb on - strand, within PFR28_04705at 5364.499 kb on + strand, within PFR28_04705at 5364.499 kb on + strand, within PFR28_04705at 5364.499 kb on + strand, within PFR28_04705at 5364.499 kb on + strand, within PFR28_04705at 5364.500 kb on - strand, within PFR28_04705at 5364.503 kb on + strand, within PFR28_04705at 5364.503 kb on + strand, within PFR28_04705at 5364.503 kb on + strand, within PFR28_04705at 5364.503 kb on + strand, within PFR28_04705at 5364.503 kb on + strand, within PFR28_04705at 5364.503 kb on + strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.504 kb on - strand, within PFR28_04705at 5364.619 kb on + strand, within PFR28_04705at 5364.619 kb on + strand, within PFR28_04705at 5364.619 kb on + strand, within PFR28_04705at 5364.619 kb on + strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.620 kb on - strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.692 kb on + strand, within PFR28_04705at 5364.693 kb on - strand, within PFR28_04705at 5364.693 kb on - strand, within PFR28_04705at 5364.693 kb on - strand, within PFR28_04705at 5364.693 kb on - strand, within PFR28_04705at 5364.696 kb on - strand, within PFR28_04705at 5364.784 kb on + strand, within PFR28_04705at 5364.784 kb on + strand, within PFR28_04705at 5364.785 kb on - strand, within PFR28_04705at 5364.785 kb on - strand, within PFR28_04705at 5364.809 kb on + strand, within PFR28_04705at 5364.809 kb on + strand, within PFR28_04705at 5364.809 kb on + strand, within PFR28_04705at 5364.810 kb on - strand, within PFR28_04705at 5364.810 kb on - strand, within PFR28_04705at 5364.810 kb on - strand, within PFR28_04705at 5364.810 kb on - strand, within PFR28_04705at 5364.810 kb on - strand, within PFR28_04705at 5364.818 kb on + strand, within PFR28_04705at 5364.818 kb on + strand, within PFR28_04705at 5364.819 kb on - strand, within PFR28_04705at 5364.819 kb on - strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.895 kb on + strand, within PFR28_04705at 5364.896 kb on - strand, within PFR28_04705at 5364.986 kb on + strandat 5364.986 kb on + strandat 5364.986 kb on + strandat 5364.986 kb on + strandat 5364.986 kb on + strandat 5364.986 kb on + strandat 5364.987 kb on - strandat 5364.987 kb on - strandat 5364.990 kb on - strandat 5365.064 kb on - strandat 5365.130 kb on - strandat 5365.153 kb on + strandat 5365.314 kb on - strand, within PFR28_04706at 5365.314 kb on - strand, within PFR28_04706at 5365.356 kb on - strand, within PFR28_04706at 5365.508 kb on + strand, within PFR28_04706at 5365.508 kb on + strand, within PFR28_04706at 5365.509 kb on - strand, within PFR28_04706at 5365.509 kb on - strand, within PFR28_04706at 5365.530 kb on + strandat 5365.530 kb on + strandat 5365.540 kb on + strandat 5365.541 kb on - strandat 5365.612 kb on - strandat 5365.651 kb on + strandat 5365.651 kb on + strandat 5365.652 kb on - strandat 5365.652 kb on - strandat 5365.652 kb on - strandat 5365.652 kb on - strandat 5365.677 kb on + strandat 5365.677 kb on + strandat 5365.677 kb on + strandat 5365.678 kb on - strandat 5365.678 kb on - strandat 5365.678 kb on - strandat 5365.678 kb on - strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.761 kb on + strandat 5365.762 kb on - strandat 5365.762 kb on - strandat 5365.762 kb on - strandat 5365.762 kb on - strandat 5365.762 kb on - strandat 5365.770 kb on - strandat 5366.030 kb on - strand, within PFR28_04707at 5366.088 kb on + strand, within PFR28_04707at 5366.098 kb on + strand, within PFR28_04707at 5366.099 kb on - strand, within PFR28_04707at 5366.099 kb on - strand, within PFR28_04707at 5366.099 kb on - strand, within PFR28_04707at 5366.119 kb on + strand, within PFR28_04707at 5366.119 kb on + strand, within PFR28_04707at 5366.122 kb on - strand, within PFR28_04707at 5366.166 kb on + strandat 5366.166 kb on + strandat 5366.167 kb on - strandat 5366.167 kb on - strandat 5366.167 kb on - strandat 5366.167 kb on - strandat 5366.201 kb on + strandat 5366.201 kb on + strandat 5366.201 kb on + strandat 5366.201 kb on + strandat 5366.201 kb on + strandat 5366.202 kb on - strandat 5366.202 kb on - strandat 5366.202 kb on - strandat 5366.288 kb on + strand, within PFR28_04708at 5366.288 kb on + strand, within PFR28_04708at 5366.288 kb on + strand, within PFR28_04708at 5366.289 kb on - strand, within PFR28_04708at 5366.289 kb on - strand, within PFR28_04708at 5366.289 kb on - strand, within PFR28_04708at 5366.502 kb on + strandat 5366.502 kb on + strandat 5366.502 kb on + strandat 5366.502 kb on + strandat 5366.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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5,364,158 + PFR28_04705 0.16 -0.3
5,364,158 + PFR28_04705 0.16 -0.8
5,364,158 + PFR28_04705 0.16 +0.0
5,364,158 + PFR28_04705 0.16 +0.1
5,364,158 + PFR28_04705 0.16 +0.3
5,364,158 + PFR28_04705 0.16 +1.3
5,364,158 + PFR28_04705 0.16 +1.2
5,364,158 + PFR28_04705 0.16 +1.2
5,364,158 + PFR28_04705 0.16 -0.8
5,364,158 + PFR28_04705 0.16 -0.6
5,364,158 + PFR28_04705 0.16 -1.5
5,364,158 + PFR28_04705 0.16 -0.1
5,364,159 - PFR28_04705 0.16 +0.3
5,364,159 - PFR28_04705 0.16 -0.6
5,364,159 - PFR28_04705 0.16 +0.3
5,364,159 - PFR28_04705 0.16 +1.7
5,364,159 - PFR28_04705 0.16 -0.9
5,364,159 - PFR28_04705 0.16 -0.0
5,364,159 - PFR28_04705 0.16 -0.3
5,364,159 - PFR28_04705 0.16 +0.5
5,364,159 - PFR28_04705 0.16 -0.1
5,364,159 - PFR28_04705 0.16 +0.4
5,364,200 + PFR28_04705 0.20 -2.7
5,364,200 + PFR28_04705 0.20 -0.3
5,364,200 + PFR28_04705 0.20 -0.0
5,364,218 + PFR28_04705 0.22 +0.2
5,364,218 + PFR28_04705 0.22 +1.3
5,364,218 + PFR28_04705 0.22 -1.2
5,364,219 - PFR28_04705 0.22 +0.7
5,364,219 - PFR28_04705 0.22 -2.1
5,364,219 - PFR28_04705 0.22 -1.9
5,364,219 - PFR28_04705 0.22 -0.2
5,364,219 - PFR28_04705 0.22 -2.2
5,364,219 - PFR28_04705 0.22 +0.5
5,364,257 + PFR28_04705 0.25 -1.3
5,364,257 + PFR28_04705 0.25 -1.8
5,364,258 - PFR28_04705 0.25 -0.4
5,364,258 - PFR28_04705 0.25 -1.1
5,364,329 + PFR28_04705 0.32 -0.2
5,364,329 + PFR28_04705 0.32 -1.6
5,364,330 - PFR28_04705 0.32 +0.4
5,364,330 - PFR28_04705 0.32 +0.3
5,364,330 - PFR28_04705 0.32 +0.6
5,364,330 - PFR28_04705 0.32 +1.2
5,364,330 - PFR28_04705 0.32 -1.2
5,364,499 + PFR28_04705 0.49 +0.8
5,364,499 + PFR28_04705 0.49 +1.2
5,364,499 + PFR28_04705 0.49 -1.8
5,364,499 + PFR28_04705 0.49 +0.4
5,364,500 - PFR28_04705 0.49 +1.2
5,364,503 + PFR28_04705 0.49 +0.3
5,364,503 + PFR28_04705 0.49 +0.3
5,364,503 + PFR28_04705 0.49 +0.4
5,364,503 + PFR28_04705 0.49 +1.2
5,364,503 + PFR28_04705 0.49 -0.8
5,364,503 + PFR28_04705 0.49 -2.0
5,364,504 - PFR28_04705 0.49 -0.1
5,364,504 - PFR28_04705 0.49 -0.2
5,364,504 - PFR28_04705 0.49 +0.0
5,364,504 - PFR28_04705 0.49 +0.2
5,364,504 - PFR28_04705 0.49 +0.8
5,364,504 - PFR28_04705 0.49 -0.6
5,364,504 - PFR28_04705 0.49 -0.9
5,364,504 - PFR28_04705 0.49 -0.1
5,364,504 - PFR28_04705 0.49 +0.8
5,364,619 + PFR28_04705 0.61 +0.2
5,364,619 + PFR28_04705 0.61 +0.6
5,364,619 + PFR28_04705 0.61 -0.9
5,364,619 + PFR28_04705 0.61 -0.1
5,364,620 - PFR28_04705 0.61 -0.4
5,364,620 - PFR28_04705 0.61 -0.4
5,364,620 - PFR28_04705 0.61 -2.4
5,364,620 - PFR28_04705 0.61 +0.5
5,364,620 - PFR28_04705 0.61 +1.1
5,364,620 - PFR28_04705 0.61 -0.1
5,364,620 - PFR28_04705 0.61 -0.5
5,364,692 + PFR28_04705 0.68 -0.4
5,364,692 + PFR28_04705 0.68 +0.1
5,364,692 + PFR28_04705 0.68 +0.8
5,364,692 + PFR28_04705 0.68 +0.2
5,364,692 + PFR28_04705 0.68 +0.2
5,364,692 + PFR28_04705 0.68 -0.2
5,364,692 + PFR28_04705 0.68 -0.9
5,364,692 + PFR28_04705 0.68 +0.3
5,364,692 + PFR28_04705 0.68 -0.0
5,364,693 - PFR28_04705 0.68 +0.0
5,364,693 - PFR28_04705 0.68 +0.5
5,364,693 - PFR28_04705 0.68 +0.1
5,364,693 - PFR28_04705 0.68 -1.4
5,364,696 - PFR28_04705 0.68 -0.2
5,364,784 + PFR28_04705 0.77 -0.9
5,364,784 + PFR28_04705 0.77 +0.6
5,364,785 - PFR28_04705 0.77 -1.2
5,364,785 - PFR28_04705 0.77 +1.2
5,364,809 + PFR28_04705 0.79 +0.7
5,364,809 + PFR28_04705 0.79 -0.8
5,364,809 + PFR28_04705 0.79 -0.2
5,364,810 - PFR28_04705 0.79 -1.0
5,364,810 - PFR28_04705 0.79 +0.2
5,364,810 - PFR28_04705 0.79 -1.4
5,364,810 - PFR28_04705 0.79 +0.3
5,364,810 - PFR28_04705 0.79 -0.3
5,364,818 + PFR28_04705 0.80 +0.4
5,364,818 + PFR28_04705 0.80 -0.6
5,364,819 - PFR28_04705 0.80 -3.0
5,364,819 - PFR28_04705 0.80 +0.4
5,364,895 + PFR28_04705 0.88 -1.1
5,364,895 + PFR28_04705 0.88 +0.2
5,364,895 + PFR28_04705 0.88 +0.7
5,364,895 + PFR28_04705 0.88 -0.1
5,364,895 + PFR28_04705 0.88 -0.1
5,364,895 + PFR28_04705 0.88 +0.6
5,364,895 + PFR28_04705 0.88 +0.0
5,364,895 + PFR28_04705 0.88 +0.5
5,364,895 + PFR28_04705 0.88 +0.2
5,364,896 - PFR28_04705 0.88 -0.1
5,364,986 + +2.0
5,364,986 + -2.6
5,364,986 + +0.3
5,364,986 + +0.0
5,364,986 + +0.7
5,364,986 + +0.0
5,364,987 - -0.2
5,364,987 - +1.1
5,364,990 - +1.2
5,365,064 - -0.1
5,365,130 - -0.4
5,365,153 + +0.9
5,365,314 - PFR28_04706 0.39 -0.5
5,365,314 - PFR28_04706 0.39 +0.0
5,365,356 - PFR28_04706 0.49 +0.1
5,365,508 + PFR28_04706 0.86 -0.9
5,365,508 + PFR28_04706 0.86 +0.1
5,365,509 - PFR28_04706 0.86 -1.3
5,365,509 - PFR28_04706 0.86 -2.9
5,365,530 + -2.2
5,365,530 + -0.8
5,365,540 + -0.8
5,365,541 - -0.4
5,365,612 - +0.3
5,365,651 + -0.6
5,365,651 + +1.2
5,365,652 - -2.7
5,365,652 - +0.5
5,365,652 - +0.8
5,365,652 - +0.3
5,365,677 + -1.2
5,365,677 + +0.7
5,365,677 + -0.4
5,365,678 - -0.4
5,365,678 - -0.7
5,365,678 - -0.4
5,365,678 - +0.0
5,365,761 + -0.0
5,365,761 + -0.5
5,365,761 + +0.1
5,365,761 + +0.6
5,365,761 + +0.2
5,365,761 + -0.1
5,365,761 + +0.1
5,365,761 + -0.8
5,365,761 + +0.6
5,365,761 + -0.5
5,365,761 + +0.8
5,365,762 - -1.6
5,365,762 - -0.8
5,365,762 - +1.6
5,365,762 - +0.4
5,365,762 - +0.6
5,365,770 - +1.9
5,366,030 - PFR28_04707 0.66 -0.4
5,366,088 + PFR28_04707 0.79 -0.5
5,366,098 + PFR28_04707 0.82 +1.2
5,366,099 - PFR28_04707 0.82 -0.9
5,366,099 - PFR28_04707 0.82 -1.4
5,366,099 - PFR28_04707 0.82 -0.4
5,366,119 + PFR28_04707 0.87 +1.5
5,366,119 + PFR28_04707 0.87 -0.2
5,366,122 - PFR28_04707 0.87 +0.5
5,366,166 + +1.5
5,366,166 + -1.8
5,366,167 - -0.4
5,366,167 - -0.1
5,366,167 - -0.1
5,366,167 - -0.2
5,366,201 + +0.4
5,366,201 + +0.6
5,366,201 + -0.2
5,366,201 + -0.5
5,366,201 + -0.1
5,366,202 - +2.2
5,366,202 - +0.7
5,366,202 - +0.3
5,366,288 + PFR28_04708 0.45 -2.7
5,366,288 + PFR28_04708 0.45 +0.8
5,366,288 + PFR28_04708 0.45 +0.1
5,366,289 - PFR28_04708 0.46 -1.2
5,366,289 - PFR28_04708 0.46 -1.6
5,366,289 - PFR28_04708 0.46 +0.0
5,366,502 + -1.8
5,366,502 + -1.4
5,366,502 + -0.3
5,366,502 + +2.0
5,366,503 - +0.2

Or see this region's nucleotide sequence