Strain Fitness in Pseudomonas sp. RS175 around PFR28_04306

Experiment: octanoate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	octanoate (C)
4,911,513	+				-0.9
4,911,513	+				+0.6
4,911,514	-				+1.3
4,911,514	-				+0.3
4,911,514	-				-0.2
4,911,514	-				-0.3
4,911,514	-				+0.7
4,911,535	+				+0.7
4,911,782	-		PFR28_04305	0.40	-0.1
4,911,907	+		PFR28_04305	0.61	-0.4
4,911,907	+		PFR28_04305	0.61	+0.1
4,911,907	+		PFR28_04305	0.61	-0.0
4,911,907	+		PFR28_04305	0.61	-1.7
4,911,908	-		PFR28_04305	0.61	-1.0
4,911,908	-		PFR28_04305	0.61	-0.0
4,912,027	+		PFR28_04305	0.81	+2.3
4,912,027	+		PFR28_04305	0.81	-1.3
4,912,027	+		PFR28_04305	0.81	-0.5
4,912,027	+		PFR28_04305	0.81	-1.3
4,912,027	+		PFR28_04305	0.81	-0.5
4,912,028	-		PFR28_04305	0.82	-2.2
4,912,028	-		PFR28_04305	0.82	-0.3
4,912,028	-		PFR28_04305	0.82	-1.4
4,912,148	+				+1.0
4,912,148	+				+0.3
4,912,149	-				+1.1
4,912,200	+				+0.4
4,912,200	+				-0.2
4,912,200	+				-0.2
4,912,201	-				-0.8
4,912,201	-				+0.3
4,912,201	-				+0.1
4,912,284	+				+1.1
4,912,285	-				+1.5
4,912,319	+				+0.9
4,912,319	+				+0.6
4,912,320	-				+1.1
4,912,320	-				+1.3
4,912,320	-				+0.5
4,912,437	+				-0.4
4,912,438	-				+0.9
4,912,438	-				-1.7
4,912,467	+				-0.4
4,912,467	+				+0.2
4,912,468	-				-3.1
4,912,468	-				-0.5
4,912,485	+				-0.6
4,912,486	-				-1.7
4,912,587	+		PFR28_04306	0.24	-0.0
4,912,587	+		PFR28_04306	0.24	-1.0
4,912,587	+		PFR28_04306	0.24	+0.1
4,912,587	+		PFR28_04306	0.24	-0.7
4,912,587	+		PFR28_04306	0.24	+0.3
4,912,587	+		PFR28_04306	0.24	+0.5
4,912,587	+		PFR28_04306	0.24	+0.4
4,912,587	+		PFR28_04306	0.24	+0.4
4,912,587	+		PFR28_04306	0.24	-0.8
4,912,588	-		PFR28_04306	0.24	-0.5
4,912,588	-		PFR28_04306	0.24	-2.4
4,912,588	-		PFR28_04306	0.24	-0.2
4,912,588	-		PFR28_04306	0.24	-1.5
4,912,588	-		PFR28_04306	0.24	-0.2
4,912,588	-		PFR28_04306	0.24	+0.1
4,912,588	-		PFR28_04306	0.24	-1.4
4,912,588	-		PFR28_04306	0.24	-0.1
4,912,588	-		PFR28_04306	0.24	-0.1
4,912,592	-		PFR28_04306	0.24	-1.3
4,912,723	+		PFR28_04306	0.45	-0.3
4,912,723	+		PFR28_04306	0.45	-0.1
4,912,723	+		PFR28_04306	0.45	-0.2
4,912,724	-		PFR28_04306	0.45	+0.9
4,912,724	-		PFR28_04306	0.45	-1.9
4,912,724	-		PFR28_04306	0.45	-1.0
4,912,744	+		PFR28_04306	0.48	+1.3
4,912,752	+		PFR28_04306	0.49	-1.3
4,912,753	-		PFR28_04306	0.50	+0.6
4,912,753	-		PFR28_04306	0.50	-0.6
4,912,987	+		PFR28_04306	0.86	-0.3
4,912,987	+		PFR28_04306	0.86	+3.9
4,912,987	+		PFR28_04306	0.86	-1.5
4,912,987	+		PFR28_04306	0.86	-1.5
4,912,987	+		PFR28_04306	0.86	-2.2
4,912,988	-		PFR28_04306	0.86	-1.3
4,912,988	-		PFR28_04306	0.86	-0.4
4,913,131	+				-0.0
4,913,172	-				-0.4
4,913,204	-				+0.2
4,913,279	-				+1.2
4,913,351	+				+0.6
4,913,351	+				-0.6
4,913,352	-				-1.5
4,913,352	-				-0.4
4,913,358	+				+1.5
4,913,358	+				-0.1
4,913,358	+				-0.1
4,913,359	-				+1.0
4,913,359	-				-0.4
4,913,359	-				+0.1
4,913,370	+				+0.2
4,913,370	+				+1.3
4,913,370	+				+0.4
4,913,370	+				+0.1
4,913,370	+				+1.7
4,913,371	-				-0.0
4,913,371	-				-1.1
4,913,371	-				+0.1
4,913,371	-				+1.0
4,913,371	-				-1.0
4,913,371	-				+0.4
4,913,376	+				-2.4
4,913,376	+				-0.1
4,913,377	-				+0.7
4,913,377	-				+0.2
4,913,377	-				-0.3
4,913,377	-				-0.2
4,913,377	-				-0.8
4,913,377	-				+0.9
4,913,430	+				+1.4
4,913,430	+				-1.4
4,913,434	+				-0.6
4,913,434	+				-0.5
4,913,434	+				-0.5
4,913,434	+				+0.3
4,913,434	+				+1.0
4,913,435	-				+0.6
4,913,435	-				-0.4
4,913,483	+				-0.1
4,913,483	+				-0.4
4,913,483	+				+0.7
4,913,484	-				-2.2
4,913,484	-				+0.7
4,913,484	-				-0.3
4,913,484	-				-1.3
4,913,484	-				+1.0
4,913,487	+				+2.7
4,913,487	+				+0.8
4,913,487	+				+0.2
4,913,487	+				-1.0
4,913,487	+				+0.4
4,913,487	+				+1.9
4,913,488	-				-0.0
4,913,488	-				-1.7
4,913,488	-				-0.4
4,913,488	-				-0.7
4,913,520	+		PFR28_04307	0.12	-1.2
4,913,521	-		PFR28_04307	0.12	+1.3
4,913,566	-		PFR28_04307	0.16	-0.6
4,913,619	+		PFR28_04307	0.20	-2.3
4,913,619	+		PFR28_04307	0.20	-1.4
4,913,620	-		PFR28_04307	0.20	-0.5
4,913,620	-		PFR28_04307	0.20	-1.2
4,913,636	-		PFR28_04307	0.21	-3.7
4,913,636	-		PFR28_04307	0.21	-0.3
4,913,636	-		PFR28_04307	0.21	+1.0
4,913,636	-		PFR28_04307	0.21	+0.3
4,913,685	+		PFR28_04307	0.25	-0.0
4,913,685	+		PFR28_04307	0.25	+2.4
4,913,685	+		PFR28_04307	0.25	+1.4
4,913,685	+		PFR28_04307	0.25	-0.7
4,913,685	+		PFR28_04307	0.25	-1.7
4,913,686	-		PFR28_04307	0.25	+0.6
4,913,686	-		PFR28_04307	0.25	+1.4
4,913,686	-		PFR28_04307	0.25	-1.1
4,913,751	+		PFR28_04307	0.30	-1.5
4,913,752	-		PFR28_04307	0.30	+0.3
4,913,752	-		PFR28_04307	0.30	-2.1
4,913,752	-		PFR28_04307	0.30	+2.2
4,913,817	+		PFR28_04307	0.35	-3.2
4,913,817	+		PFR28_04307	0.35	+0.9
4,913,817	+		PFR28_04307	0.35	-1.5
4,913,817	+		PFR28_04307	0.35	-0.6
4,913,818	-		PFR28_04307	0.35	+0.9
4,913,818	-		PFR28_04307	0.35	-1.9
4,913,818	-		PFR28_04307	0.35	+1.1
4,913,818	-		PFR28_04307	0.35	+3.4
4,913,818	-		PFR28_04307	0.35	-1.7
4,913,818	-		PFR28_04307	0.35	-1.1
4,913,818	-		PFR28_04307	0.35	+0.4
4,913,937	+		PFR28_04307	0.44	-0.2
4,913,938	-		PFR28_04307	0.44	+0.0
4,913,938	-		PFR28_04307	0.44	+0.3
4,913,981	+		PFR28_04307	0.47	-2.0
4,913,981	+		PFR28_04307	0.47	+1.3
4,913,981	+		PFR28_04307	0.47	+0.4
4,913,981	+		PFR28_04307	0.47	-0.8
4,913,982	-		PFR28_04307	0.47	-0.3
4,913,982	-		PFR28_04307	0.47	+0.4
4,913,982	-		PFR28_04307	0.47	-1.2
4,913,987	+		PFR28_04307	0.48	+0.9
4,913,988	-		PFR28_04307	0.48	-1.7
4,914,012	+		PFR28_04307	0.50	-2.2
4,914,012	+		PFR28_04307	0.50	+0.1
4,914,012	+		PFR28_04307	0.50	-0.4
4,914,012	+		PFR28_04307	0.50	+0.4
4,914,012	+		PFR28_04307	0.50	-0.4
4,914,013	-		PFR28_04307	0.50	-0.4
4,914,013	-		PFR28_04307	0.50	+1.5
4,914,013	-		PFR28_04307	0.50	+1.0
4,914,013	-		PFR28_04307	0.50	-0.5
4,914,013	-		PFR28_04307	0.50	-0.9
4,914,013	-		PFR28_04307	0.50	-0.5
4,914,013	-		PFR28_04307	0.50	+0.4
4,914,015	+		PFR28_04307	0.50	-1.2
4,914,015	+		PFR28_04307	0.50	-0.0
4,914,015	+		PFR28_04307	0.50	+0.9
4,914,016	-		PFR28_04307	0.50	+0.3
4,914,033	+		PFR28_04307	0.51	+0.3
4,914,033	+		PFR28_04307	0.51	+1.9
4,914,034	-		PFR28_04307	0.51	+1.0
4,914,034	-		PFR28_04307	0.51	-2.2
4,914,034	-		PFR28_04307	0.51	-1.7
4,914,034	-		PFR28_04307	0.51	-0.9
4,914,036	+		PFR28_04307	0.51	-2.6
4,914,036	+		PFR28_04307	0.51	-2.7
4,914,036	+		PFR28_04307	0.51	+0.9
4,914,036	+		PFR28_04307	0.51	+0.5
4,914,036	+		PFR28_04307	0.51	-0.2
4,914,036	+		PFR28_04307	0.51	+0.1
4,914,037	-		PFR28_04307	0.52	+1.3
4,914,037	-		PFR28_04307	0.52	-0.6
4,914,037	-		PFR28_04307	0.52	+1.3
4,914,037	-		PFR28_04307	0.52	-0.1
4,914,037	-		PFR28_04307	0.52	+1.2
4,914,037	-		PFR28_04307	0.52	+1.0
4,914,037	-		PFR28_04307	0.52	-1.5
4,914,037	-		PFR28_04307	0.52	-0.7
4,914,037	-		PFR28_04307	0.52	+0.1
4,914,039	+		PFR28_04307	0.52	-0.7
4,914,040	-		PFR28_04307	0.52	-1.7
4,914,040	-		PFR28_04307	0.52	+0.1
4,914,040	-		PFR28_04307	0.52	+2.3
4,914,040	-		PFR28_04307	0.52	-0.3