Strain Fitness in Pseudomonas sp. RS175 around PFR28_04208

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04207 and PFR28_04208 are separated by 225 nucleotidesPFR28_04208 and PFR28_04209 are separated by 102 nucleotidesPFR28_04209 and PFR28_04210 are separated by 156 nucleotides PFR28_04207: PFR28_04207 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 4,810,808 to 4,812,580 _04207 PFR28_04208: PFR28_04208 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 4,812,806 to 4,814,212 _04208 PFR28_04209: PFR28_04209 - Ribosomal RNA small subunit methyltransferase E, at 4,814,315 to 4,815,034 _04209 PFR28_04210: PFR28_04210 - Glutamate/aspartate import solute-binding protein, at 4,815,191 to 4,816,090 _04210 Position (kb) 4812 4813 4814 4815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4811.955 kb on + strand, within PFR28_04207at 4811.956 kb on - strand, within PFR28_04207at 4811.979 kb on + strand, within PFR28_04207at 4812.009 kb on + strand, within PFR28_04207at 4812.112 kb on + strand, within PFR28_04207at 4812.112 kb on + strand, within PFR28_04207at 4812.112 kb on + strand, within PFR28_04207at 4812.113 kb on - strand, within PFR28_04207at 4812.113 kb on - strand, within PFR28_04207at 4812.113 kb on - strand, within PFR28_04207at 4812.237 kb on + strand, within PFR28_04207at 4812.237 kb on + strand, within PFR28_04207at 4812.238 kb on - strand, within PFR28_04207at 4812.238 kb on - strand, within PFR28_04207at 4812.238 kb on - strand, within PFR28_04207at 4812.238 kb on - strand, within PFR28_04207at 4812.238 kb on - strand, within PFR28_04207at 4812.238 kb on - strand, within PFR28_04207at 4812.256 kb on - strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.315 kb on + strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.316 kb on - strand, within PFR28_04207at 4812.441 kb on + strandat 4812.441 kb on + strandat 4812.442 kb on - strandat 4812.442 kb on - strandat 4812.496 kb on + strandat 4812.496 kb on + strandat 4812.622 kb on - strandat 4812.654 kb on + strandat 4812.654 kb on + strandat 4812.654 kb on + strandat 4812.654 kb on + strandat 4812.687 kb on + strandat 4812.687 kb on + strandat 4812.748 kb on + strandat 4812.748 kb on + strandat 4812.748 kb on + strandat 4812.749 kb on - strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.803 kb on + strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.804 kb on - strandat 4812.950 kb on + strand, within PFR28_04208at 4812.950 kb on + strand, within PFR28_04208at 4812.985 kb on - strand, within PFR28_04208at 4812.985 kb on - strand, within PFR28_04208at 4813.139 kb on + strand, within PFR28_04208at 4813.250 kb on + strand, within PFR28_04208at 4813.250 kb on + strand, within PFR28_04208at 4813.251 kb on - strand, within PFR28_04208at 4813.251 kb on - strand, within PFR28_04208at 4813.251 kb on - strand, within PFR28_04208at 4813.310 kb on + strand, within PFR28_04208at 4813.310 kb on + strand, within PFR28_04208at 4813.310 kb on + strand, within PFR28_04208at 4813.502 kb on + strand, within PFR28_04208at 4813.502 kb on + strand, within PFR28_04208at 4813.502 kb on + strand, within PFR28_04208at 4813.503 kb on - strand, within PFR28_04208at 4813.503 kb on - strand, within PFR28_04208at 4813.503 kb on - strand, within PFR28_04208at 4813.503 kb on - strand, within PFR28_04208at 4813.503 kb on - strand, within PFR28_04208at 4813.514 kb on + strand, within PFR28_04208at 4813.627 kb on + strand, within PFR28_04208at 4813.696 kb on + strand, within PFR28_04208at 4813.696 kb on + strand, within PFR28_04208at 4813.697 kb on - strand, within PFR28_04208at 4813.697 kb on - strand, within PFR28_04208at 4813.724 kb on + strand, within PFR28_04208at 4813.725 kb on - strand, within PFR28_04208at 4813.769 kb on + strand, within PFR28_04208at 4813.769 kb on + strand, within PFR28_04208at 4813.770 kb on - strand, within PFR28_04208at 4813.770 kb on - strand, within PFR28_04208at 4813.918 kb on - strand, within PFR28_04208at 4814.067 kb on - strand, within PFR28_04208at 4814.081 kb on + strandat 4814.081 kb on + strandat 4814.081 kb on + strandat 4814.081 kb on + strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.082 kb on - strandat 4814.294 kb on + strandat 4814.390 kb on + strand, within PFR28_04209at 4814.390 kb on + strand, within PFR28_04209at 4814.390 kb on + strand, within PFR28_04209at 4814.390 kb on + strand, within PFR28_04209at 4814.390 kb on + strand, within PFR28_04209at 4814.390 kb on + strand, within PFR28_04209at 4814.390 kb on + strand, within PFR28_04209at 4814.391 kb on - strand, within PFR28_04209at 4814.391 kb on - strand, within PFR28_04209at 4814.548 kb on + strand, within PFR28_04209at 4814.548 kb on + strand, within PFR28_04209at 4814.548 kb on + strand, within PFR28_04209at 4814.548 kb on + strand, within PFR28_04209at 4814.548 kb on + strand, within PFR28_04209at 4814.549 kb on - strand, within PFR28_04209at 4814.549 kb on - strand, within PFR28_04209at 4814.549 kb on - strand, within PFR28_04209at 4815.061 kb on + strandat 4815.062 kb on - strandat 4815.062 kb on - strandat 4815.192 kb on + strandat 4815.193 kb on - strandat 4815.193 kb on - strandat 4815.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,811,955 + PFR28_04207 0.65 +0.3
4,811,956 - PFR28_04207 0.65 -0.0
4,811,979 + PFR28_04207 0.66 -0.9
4,812,009 + PFR28_04207 0.68 +0.3
4,812,112 + PFR28_04207 0.74 -0.1
4,812,112 + PFR28_04207 0.74 -0.8
4,812,112 + PFR28_04207 0.74 -0.3
4,812,113 - PFR28_04207 0.74 +1.1
4,812,113 - PFR28_04207 0.74 +0.3
4,812,113 - PFR28_04207 0.74 +0.1
4,812,237 + PFR28_04207 0.81 +0.5
4,812,237 + PFR28_04207 0.81 -0.1
4,812,238 - PFR28_04207 0.81 -0.3
4,812,238 - PFR28_04207 0.81 +0.3
4,812,238 - PFR28_04207 0.81 -0.3
4,812,238 - PFR28_04207 0.81 -0.0
4,812,238 - PFR28_04207 0.81 +0.6
4,812,238 - PFR28_04207 0.81 -0.5
4,812,256 - PFR28_04207 0.82 +0.5
4,812,315 + PFR28_04207 0.85 +1.1
4,812,315 + PFR28_04207 0.85 -0.4
4,812,315 + PFR28_04207 0.85 -0.3
4,812,315 + PFR28_04207 0.85 -0.0
4,812,315 + PFR28_04207 0.85 -1.7
4,812,315 + PFR28_04207 0.85 -0.3
4,812,315 + PFR28_04207 0.85 +0.0
4,812,315 + PFR28_04207 0.85 -0.4
4,812,315 + PFR28_04207 0.85 +0.6
4,812,315 + PFR28_04207 0.85 -0.4
4,812,315 + PFR28_04207 0.85 -0.1
4,812,316 - PFR28_04207 0.85 -1.0
4,812,316 - PFR28_04207 0.85 -0.2
4,812,316 - PFR28_04207 0.85 +0.3
4,812,316 - PFR28_04207 0.85 +0.7
4,812,316 - PFR28_04207 0.85 +0.4
4,812,316 - PFR28_04207 0.85 +0.1
4,812,316 - PFR28_04207 0.85 +0.0
4,812,316 - PFR28_04207 0.85 -1.1
4,812,441 + +0.2
4,812,441 + -0.1
4,812,442 - -0.5
4,812,442 - -1.1
4,812,496 + +2.3
4,812,496 + +0.2
4,812,622 - -0.3
4,812,654 + -2.0
4,812,654 + +0.7
4,812,654 + +0.5
4,812,654 + -2.4
4,812,687 + +0.1
4,812,687 + +2.0
4,812,748 + -1.4
4,812,748 + -0.4
4,812,748 + -0.1
4,812,749 - +0.3
4,812,803 + -0.7
4,812,803 + +0.6
4,812,803 + -0.5
4,812,803 + +2.2
4,812,803 + +0.1
4,812,803 + +0.9
4,812,803 + -0.7
4,812,803 + -1.3
4,812,803 + +0.9
4,812,803 + -1.1
4,812,803 + -1.7
4,812,803 + -1.6
4,812,803 + +0.2
4,812,803 + -0.0
4,812,803 + -0.1
4,812,803 + -0.3
4,812,803 + -1.4
4,812,803 + -1.7
4,812,804 - -1.6
4,812,804 - -3.7
4,812,804 - -2.9
4,812,804 - -0.1
4,812,804 - -2.7
4,812,804 - -2.7
4,812,804 - -1.1
4,812,804 - -2.1
4,812,804 - -0.7
4,812,804 - -2.7
4,812,804 - -3.3
4,812,804 - -0.4
4,812,804 - -2.1
4,812,804 - -0.2
4,812,950 + PFR28_04208 0.10 +0.7
4,812,950 + PFR28_04208 0.10 -0.3
4,812,985 - PFR28_04208 0.13 -2.8
4,812,985 - PFR28_04208 0.13 -1.9
4,813,139 + PFR28_04208 0.24 -1.9
4,813,250 + PFR28_04208 0.32 -0.7
4,813,250 + PFR28_04208 0.32 -1.6
4,813,251 - PFR28_04208 0.32 -1.6
4,813,251 - PFR28_04208 0.32 +0.3
4,813,251 - PFR28_04208 0.32 -1.6
4,813,310 + PFR28_04208 0.36 -0.7
4,813,310 + PFR28_04208 0.36 -1.8
4,813,310 + PFR28_04208 0.36 -2.1
4,813,502 + PFR28_04208 0.49 -3.4
4,813,502 + PFR28_04208 0.49 -0.6
4,813,502 + PFR28_04208 0.49 -0.7
4,813,503 - PFR28_04208 0.50 -2.8
4,813,503 - PFR28_04208 0.50 -0.3
4,813,503 - PFR28_04208 0.50 -2.3
4,813,503 - PFR28_04208 0.50 -2.7
4,813,503 - PFR28_04208 0.50 -0.3
4,813,514 + PFR28_04208 0.50 +1.3
4,813,627 + PFR28_04208 0.58 -0.7
4,813,696 + PFR28_04208 0.63 -2.4
4,813,696 + PFR28_04208 0.63 -3.0
4,813,697 - PFR28_04208 0.63 -1.3
4,813,697 - PFR28_04208 0.63 -1.9
4,813,724 + PFR28_04208 0.65 -1.3
4,813,725 - PFR28_04208 0.65 -0.1
4,813,769 + PFR28_04208 0.68 +1.3
4,813,769 + PFR28_04208 0.68 -1.6
4,813,770 - PFR28_04208 0.69 -1.3
4,813,770 - PFR28_04208 0.69 -3.0
4,813,918 - PFR28_04208 0.79 -1.3
4,814,067 - PFR28_04208 0.90 -2.3
4,814,081 + -0.3
4,814,081 + -1.3
4,814,081 + -0.3
4,814,081 + +0.5
4,814,082 - +1.3
4,814,082 - -1.7
4,814,082 - -2.4
4,814,082 - +0.3
4,814,082 - -0.7
4,814,082 - -2.1
4,814,082 - -1.6
4,814,082 - -2.3
4,814,082 - -1.1
4,814,294 + +0.3
4,814,390 + PFR28_04209 0.10 +1.9
4,814,390 + PFR28_04209 0.10 +0.3
4,814,390 + PFR28_04209 0.10 +0.2
4,814,390 + PFR28_04209 0.10 -0.2
4,814,390 + PFR28_04209 0.10 -2.1
4,814,390 + PFR28_04209 0.10 +0.1
4,814,390 + PFR28_04209 0.10 -0.1
4,814,391 - PFR28_04209 0.11 +0.3
4,814,391 - PFR28_04209 0.11 -1.6
4,814,548 + PFR28_04209 0.32 -0.1
4,814,548 + PFR28_04209 0.32 +0.4
4,814,548 + PFR28_04209 0.32 +1.4
4,814,548 + PFR28_04209 0.32 +0.4
4,814,548 + PFR28_04209 0.32 +0.6
4,814,549 - PFR28_04209 0.33 +0.1
4,814,549 - PFR28_04209 0.33 +0.5
4,814,549 - PFR28_04209 0.33 +0.4
4,815,061 + -0.3
4,815,062 - -0.4
4,815,062 - +1.3
4,815,192 + +0.2
4,815,193 - +0.6
4,815,193 - -2.1
4,815,193 - -0.1

Or see this region's nucleotide sequence