Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00820 and PFR28_00821 are separated by 85 nucleotides PFR28_00821 and PFR28_00822 overlap by 4 nucleotides PFR28_00822 and PFR28_00823 are separated by 250 nucleotides
PFR28_00820: PFR28_00820 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 893,827 to 894,753
_00820
PFR28_00821: PFR28_00821 - hypothetical protein, at 894,839 to 896,131
_00821
PFR28_00822: PFR28_00822 - hypothetical protein, at 896,128 to 896,397
_00822
PFR28_00823: PFR28_00823 - Flagellin, at 896,648 to 897,499
_00823
Position (kb) 894
895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 893.854 kb on + strand at 893.854 kb on + strand at 893.854 kb on + strand at 893.854 kb on + strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.864 kb on + strand at 893.881 kb on + strand at 893.881 kb on + strand at 893.881 kb on + strand at 893.881 kb on + strand at 893.881 kb on + strand at 893.881 kb on + strand at 893.882 kb on - strand at 893.882 kb on - strand at 893.882 kb on - strand at 893.882 kb on - strand at 893.882 kb on - strand at 894.132 kb on + strand, within PFR28_00820 at 894.132 kb on + strand, within PFR28_00820 at 894.133 kb on - strand, within PFR28_00820 at 894.175 kb on + strand, within PFR28_00820 at 894.175 kb on + strand, within PFR28_00820 at 894.175 kb on + strand, within PFR28_00820 at 894.175 kb on + strand, within PFR28_00820 at 894.176 kb on - strand, within PFR28_00820 at 894.176 kb on - strand, within PFR28_00820 at 894.182 kb on - strand, within PFR28_00820 at 894.190 kb on + strand, within PFR28_00820 at 894.191 kb on - strand, within PFR28_00820 at 894.191 kb on - strand, within PFR28_00820 at 894.191 kb on - strand, within PFR28_00820 at 894.191 kb on - strand, within PFR28_00820 at 894.257 kb on - strand, within PFR28_00820 at 894.609 kb on + strand, within PFR28_00820 at 894.610 kb on - strand, within PFR28_00820 at 894.738 kb on + strand at 894.738 kb on + strand at 894.738 kb on + strand at 894.738 kb on + strand at 894.739 kb on - strand at 894.739 kb on - strand at 894.743 kb on - strand at 894.743 kb on - strand at 894.743 kb on - strand at 894.743 kb on - strand at 894.743 kb on - strand at 894.761 kb on - strand at 894.761 kb on - strand at 894.761 kb on - strand at 894.761 kb on - strand at 894.780 kb on - strand at 894.793 kb on + strand at 894.793 kb on + strand at 894.793 kb on + strand at 894.794 kb on - strand at 894.794 kb on - strand at 895.068 kb on - strand, within PFR28_00821 at 895.068 kb on - strand, within PFR28_00821 at 895.068 kb on - strand, within PFR28_00821 at 895.130 kb on + strand, within PFR28_00821 at 895.130 kb on + strand, within PFR28_00821 at 895.130 kb on + strand, within PFR28_00821 at 895.130 kb on + strand, within PFR28_00821 at 895.130 kb on + strand, within PFR28_00821 at 895.130 kb on + strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.131 kb on - strand, within PFR28_00821 at 895.138 kb on + strand, within PFR28_00821 at 895.139 kb on - strand, within PFR28_00821 at 895.223 kb on + strand, within PFR28_00821 at 895.571 kb on + strand, within PFR28_00821 at 895.572 kb on - strand, within PFR28_00821 at 895.594 kb on + strand, within PFR28_00821 at 895.594 kb on + strand, within PFR28_00821 at 895.595 kb on - strand, within PFR28_00821 at 895.595 kb on - strand, within PFR28_00821 at 895.597 kb on + strand, within PFR28_00821 at 895.597 kb on + strand, within PFR28_00821 at 895.597 kb on + strand, within PFR28_00821 at 895.598 kb on - strand, within PFR28_00821 at 895.632 kb on + strand, within PFR28_00821 at 895.648 kb on - strand, within PFR28_00821 at 895.648 kb on - strand, within PFR28_00821 at 895.648 kb on - strand, within PFR28_00821 at 895.660 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.684 kb on + strand, within PFR28_00821 at 895.684 kb on + strand, within PFR28_00821 at 895.684 kb on + strand, within PFR28_00821 at 895.733 kb on + strand, within PFR28_00821 at 895.733 kb on + strand, within PFR28_00821 at 895.733 kb on + strand, within PFR28_00821 at 895.761 kb on - strand, within PFR28_00821 at 895.842 kb on + strand, within PFR28_00821 at 895.843 kb on - strand, within PFR28_00821 at 895.932 kb on + strand, within PFR28_00821 at 895.932 kb on + strand, within PFR28_00821 at 895.932 kb on + strand, within PFR28_00821 at 895.933 kb on - strand, within PFR28_00821 at 895.933 kb on - strand, within PFR28_00821 at 896.015 kb on + strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.066 kb on + strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.068 kb on + strand at 896.068 kb on + strand at 896.068 kb on + strand at 896.069 kb on - strand at 896.069 kb on - strand at 896.256 kb on + strand, within PFR28_00822 at 896.256 kb on + strand, within PFR28_00822 at 896.257 kb on - strand, within PFR28_00822 at 896.257 kb on - strand, within PFR28_00822 at 896.278 kb on + strand, within PFR28_00822 at 896.279 kb on - strand, within PFR28_00822 at 896.279 kb on - strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.347 kb on + strand, within PFR28_00822 at 896.348 kb on - strand, within PFR28_00822 at 896.348 kb on - strand, within PFR28_00822 at 896.348 kb on - strand, within PFR28_00822 at 896.356 kb on + strand, within PFR28_00822 at 896.357 kb on - strand, within PFR28_00822 at 896.357 kb on - strand, within PFR28_00822 at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.395 kb on + strand at 896.395 kb on + strand at 896.395 kb on + strand at 896.395 kb on + strand at 896.396 kb on - strand at 896.396 kb on - strand at 896.396 kb on - strand at 896.396 kb on - strand at 896.542 kb on - strand at 896.542 kb on - strand at 896.565 kb on + strand at 896.565 kb on + strand at 896.565 kb on + strand at 896.566 kb on - strand at 896.566 kb on - strand at 896.566 kb on - strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.572 kb on + strand at 896.572 kb on + strand at 896.572 kb on + strand at 896.573 kb on - strand at 896.573 kb on - strand at 896.585 kb on + strand at 896.625 kb on - strand at 896.655 kb on + strand at 896.656 kb on - strand at 896.661 kb on + strand at 896.661 kb on + strand at 896.661 kb on + strand at 896.668 kb on + strand at 896.668 kb on + strand at 896.668 kb on + strand at 896.806 kb on + strand, within PFR28_00823 at 896.806 kb on + strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.920 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.068 kb on - strand, within PFR28_00823
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 893,854 + +0.2 893,854 + +3.0 893,854 + +1.1 893,854 + +0.8 893,855 - +1.2 893,855 - +0.6 893,855 - +1.0 893,855 - +1.1 893,855 - +1.5 893,864 + +2.6 893,881 + +2.6 893,881 + +0.9 893,881 + +1.3 893,881 + +0.1 893,881 + +1.3 893,881 + +0.2 893,882 - +1.4 893,882 - +1.2 893,882 - +0.3 893,882 - +2.2 893,882 - +1.1 894,132 + PFR28_00820 0.33 +1.0 894,132 + PFR28_00820 0.33 +3.1 894,133 - PFR28_00820 0.33 -1.1 894,175 + PFR28_00820 0.38 +0.5 894,175 + PFR28_00820 0.38 +1.4 894,175 + PFR28_00820 0.38 +2.0 894,175 + PFR28_00820 0.38 -0.4 894,176 - PFR28_00820 0.38 +2.2 894,176 - PFR28_00820 0.38 +1.0 894,182 - PFR28_00820 0.38 +0.7 894,190 + PFR28_00820 0.39 +1.3 894,191 - PFR28_00820 0.39 +0.1 894,191 - PFR28_00820 0.39 +1.4 894,191 - PFR28_00820 0.39 +0.7 894,191 - PFR28_00820 0.39 +1.4 894,257 - PFR28_00820 0.46 +0.4 894,609 + PFR28_00820 0.84 +0.3 894,610 - PFR28_00820 0.84 +2.1 894,738 + +1.1 894,738 + +0.5 894,738 + +0.1 894,738 + +1.4 894,739 - +1.6 894,739 - -0.0 894,743 - +0.2 894,743 - +1.2 894,743 - -0.1 894,743 - +0.5 894,743 - +0.9 894,761 - +0.1 894,761 - -0.6 894,761 - -1.1 894,761 - +0.4 894,780 - -1.2 894,793 + +0.2 894,793 + -0.2 894,793 + +0.3 894,794 - -0.7 894,794 - +0.2 895,068 - PFR28_00821 0.18 +0.3 895,068 - PFR28_00821 0.18 +0.1 895,068 - PFR28_00821 0.18 -0.7 895,130 + PFR28_00821 0.23 +0.8 895,130 + PFR28_00821 0.23 +1.1 895,130 + PFR28_00821 0.23 -0.6 895,130 + PFR28_00821 0.23 +0.4 895,130 + PFR28_00821 0.23 -1.6 895,130 + PFR28_00821 0.23 +0.3 895,131 - PFR28_00821 0.23 +1.8 895,131 - PFR28_00821 0.23 -1.4 895,131 - PFR28_00821 0.23 +1.3 895,131 - PFR28_00821 0.23 -1.9 895,131 - PFR28_00821 0.23 +1.2 895,131 - PFR28_00821 0.23 -0.6 895,131 - PFR28_00821 0.23 +0.9 895,131 - PFR28_00821 0.23 -1.1 895,131 - PFR28_00821 0.23 +0.7 895,131 - PFR28_00821 0.23 +0.7 895,131 - PFR28_00821 0.23 +2.2 895,131 - PFR28_00821 0.23 +0.3 895,131 - PFR28_00821 0.23 -0.4 895,131 - PFR28_00821 0.23 -0.1 895,138 + PFR28_00821 0.23 -0.1 895,139 - PFR28_00821 0.23 -0.5 895,223 + PFR28_00821 0.30 +1.0 895,571 + PFR28_00821 0.57 -1.0 895,572 - PFR28_00821 0.57 +0.4 895,594 + PFR28_00821 0.58 +2.1 895,594 + PFR28_00821 0.58 -0.3 895,595 - PFR28_00821 0.58 -0.5 895,595 - PFR28_00821 0.58 +0.9 895,597 + PFR28_00821 0.59 -0.0 895,597 + PFR28_00821 0.59 +1.2 895,597 + PFR28_00821 0.59 -0.1 895,598 - PFR28_00821 0.59 +0.1 895,632 + PFR28_00821 0.61 +0.5 895,648 - PFR28_00821 0.63 -0.6 895,648 - PFR28_00821 0.63 -0.5 895,648 - PFR28_00821 0.63 -0.7 895,660 + PFR28_00821 0.63 -1.0 895,682 + PFR28_00821 0.65 -1.1 895,682 + PFR28_00821 0.65 +0.4 895,682 + PFR28_00821 0.65 -0.5 895,682 + PFR28_00821 0.65 -1.1 895,682 + PFR28_00821 0.65 +0.5 895,682 + PFR28_00821 0.65 -0.1 895,682 + PFR28_00821 0.65 -0.5 895,682 + PFR28_00821 0.65 -0.0 895,682 + PFR28_00821 0.65 -0.3 895,682 + PFR28_00821 0.65 +1.2 895,682 + PFR28_00821 0.65 -0.9 895,682 + PFR28_00821 0.65 +0.9 895,682 + PFR28_00821 0.65 -0.3 895,683 - PFR28_00821 0.65 +1.2 895,683 - PFR28_00821 0.65 -0.4 895,683 - PFR28_00821 0.65 -0.9 895,683 - PFR28_00821 0.65 -1.0 895,683 - PFR28_00821 0.65 -1.2 895,684 + PFR28_00821 0.65 -0.3 895,684 + PFR28_00821 0.65 -0.4 895,684 + PFR28_00821 0.65 +0.7 895,733 + PFR28_00821 0.69 +1.4 895,733 + PFR28_00821 0.69 +0.6 895,733 + PFR28_00821 0.69 +0.6 895,761 - PFR28_00821 0.71 +0.1 895,842 + PFR28_00821 0.78 +0.7 895,843 - PFR28_00821 0.78 -2.8 895,932 + PFR28_00821 0.85 +1.7 895,932 + PFR28_00821 0.85 +0.3 895,932 + PFR28_00821 0.85 +0.2 895,933 - PFR28_00821 0.85 -0.5 895,933 - PFR28_00821 0.85 -2.7 896,015 + +0.7 896,016 - -0.5 896,016 - -0.6 896,016 - -0.5 896,016 - -0.2 896,016 - -0.8 896,066 + +0.1 896,067 - -1.4 896,067 - -0.5 896,067 - -0.8 896,067 - -0.6 896,067 - -0.4 896,067 - -1.0 896,067 - +0.8 896,067 - -0.1 896,067 - -2.1 896,067 - -1.2 896,068 + +1.8 896,068 + -2.5 896,068 + -0.5 896,069 - +1.2 896,069 - -1.7 896,256 + PFR28_00822 0.47 -0.7 896,256 + PFR28_00822 0.47 -0.5 896,257 - PFR28_00822 0.48 +1.6 896,257 - PFR28_00822 0.48 +0.2 896,278 + PFR28_00822 0.56 +1.0 896,279 - PFR28_00822 0.56 +0.5 896,279 - PFR28_00822 0.56 -3.4 896,306 + PFR28_00822 0.66 +0.5 896,306 + PFR28_00822 0.66 +0.4 896,306 + PFR28_00822 0.66 +0.4 896,306 + PFR28_00822 0.66 +0.7 896,306 + PFR28_00822 0.66 -0.8 896,306 + PFR28_00822 0.66 -0.4 896,306 + PFR28_00822 0.66 +0.2 896,306 + PFR28_00822 0.66 -0.2 896,306 + PFR28_00822 0.66 +0.7 896,306 + PFR28_00822 0.66 +0.2 896,306 + PFR28_00822 0.66 +0.2 896,307 - PFR28_00822 0.66 +0.9 896,307 - PFR28_00822 0.66 +0.9 896,307 - PFR28_00822 0.66 -0.5 896,307 - PFR28_00822 0.66 -1.4 896,307 - PFR28_00822 0.66 -1.5 896,307 - PFR28_00822 0.66 +0.1 896,307 - PFR28_00822 0.66 +0.2 896,347 + PFR28_00822 0.81 -1.0 896,348 - PFR28_00822 0.81 +1.0 896,348 - PFR28_00822 0.81 +0.9 896,348 - PFR28_00822 0.81 +1.2 896,356 + PFR28_00822 0.84 +0.2 896,357 - PFR28_00822 0.85 +0.5 896,357 - PFR28_00822 0.85 +0.8 896,372 + -2.5 896,372 + -0.1 896,372 + -3.2 896,372 + -1.7 896,372 + -0.2 896,372 + -2.8 896,395 + +0.5 896,395 + -0.9 896,395 + +0.5 896,395 + +1.5 896,396 - -0.3 896,396 - -0.7 896,396 - +0.5 896,396 - -0.2 896,542 - +1.6 896,542 - +0.6 896,565 + -0.2 896,565 + +0.5 896,565 + -0.2 896,566 - +0.5 896,566 - -0.2 896,566 - +0.8 896,569 + -0.2 896,569 + -1.1 896,569 + +0.5 896,569 + -0.2 896,569 + +0.1 896,570 - +0.8 896,570 - +0.9 896,570 - -0.6 896,570 - +0.3 896,570 - +1.0 896,570 - -0.1 896,570 - +0.8 896,570 - +0.4 896,570 - +0.5 896,572 + +0.5 896,572 + -0.0 896,572 + -0.0 896,573 - +0.1 896,573 - -1.6 896,585 + +2.0 896,625 - +0.2 896,655 + +0.6 896,656 - -0.5 896,661 + -0.2 896,661 + -1.0 896,661 + +1.2 896,668 + +0.4 896,668 + +0.6 896,668 + -0.9 896,806 + PFR28_00823 0.19 +0.6 896,806 + PFR28_00823 0.19 -0.7 896,807 - PFR28_00823 0.19 +0.3 896,807 - PFR28_00823 0.19 -0.4 896,807 - PFR28_00823 0.19 +0.9 896,807 - PFR28_00823 0.19 -0.4 896,860 + PFR28_00823 0.25 -0.1 896,860 + PFR28_00823 0.25 -0.3 896,860 + PFR28_00823 0.25 +0.4 896,860 + PFR28_00823 0.25 +1.6 896,860 + PFR28_00823 0.25 -0.3 896,860 + PFR28_00823 0.25 +0.5 896,860 + PFR28_00823 0.25 +1.0 896,860 + PFR28_00823 0.25 +0.1 896,861 - PFR28_00823 0.25 -0.8 896,861 - PFR28_00823 0.25 +1.8 896,861 - PFR28_00823 0.25 +0.7 896,861 - PFR28_00823 0.25 +1.5 896,861 - PFR28_00823 0.25 +1.3 896,920 + PFR28_00823 0.32 -0.4 897,001 + PFR28_00823 0.41 +0.8 897,001 + PFR28_00823 0.41 -0.0 897,001 + PFR28_00823 0.41 +0.0 897,001 + PFR28_00823 0.41 +0.9 897,001 + PFR28_00823 0.41 -0.2 897,001 + PFR28_00823 0.41 -0.1 897,001 + PFR28_00823 0.41 +1.5 897,001 + PFR28_00823 0.41 -0.6 897,001 + PFR28_00823 0.41 +0.0 897,001 + PFR28_00823 0.41 +0.0 897,001 + PFR28_00823 0.41 +0.8 897,002 - PFR28_00823 0.42 +1.5 897,002 - PFR28_00823 0.42 -1.6 897,002 - PFR28_00823 0.42 +0.0 897,002 - PFR28_00823 0.42 -0.4 897,002 - PFR28_00823 0.42 -0.1 897,002 - PFR28_00823 0.42 +0.0 897,002 - PFR28_00823 0.42 -0.3 897,068 - PFR28_00823 0.49 -0.0
Or see this region's nucleotide sequence