Strain Fitness in Pseudomonas sp. RS175 around PFR28_00577

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00576 and PFR28_00577 are separated by 11 nucleotidesPFR28_00577 and PFR28_00578 are separated by 137 nucleotidesPFR28_00578 and PFR28_00579 are separated by 232 nucleotides PFR28_00576: PFR28_00576 - Isopenicillin N epimerase, at 617,683 to 618,870 _00576 PFR28_00577: PFR28_00577 - hypothetical protein, at 618,882 to 619,187 _00577 PFR28_00578: PFR28_00578 - hypothetical protein, at 619,325 to 619,789 _00578 PFR28_00579: PFR28_00579 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 620,022 to 622,022 _00579 Position (kb) 618 619 620Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 617.886 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.070 kb on - strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.507 kb on - strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.555 kb on - strand, within PFR28_00576at 618.555 kb on - strand, within PFR28_00576at 618.562 kb on + strand, within PFR28_00576at 618.677 kb on + strand, within PFR28_00576at 618.677 kb on + strand, within PFR28_00576at 618.689 kb on + strand, within PFR28_00576at 618.689 kb on + strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.731 kb on + strand, within PFR28_00576at 618.732 kb on - strand, within PFR28_00576at 618.732 kb on - strand, within PFR28_00576at 618.768 kb on - strandat 618.854 kb on - strandat 618.854 kb on - strandat 619.027 kb on + strand, within PFR28_00577at 619.028 kb on - strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.152 kb on - strand, within PFR28_00577at 619.194 kb on - strandat 619.299 kb on + strandat 619.302 kb on + strandat 619.303 kb on - strandat 619.381 kb on + strand, within PFR28_00578at 619.382 kb on - strand, within PFR28_00578at 619.655 kb on + strand, within PFR28_00578at 619.656 kb on - strand, within PFR28_00578at 619.656 kb on - strand, within PFR28_00578at 619.688 kb on - strand, within PFR28_00578at 619.688 kb on - strand, within PFR28_00578at 619.724 kb on + strand, within PFR28_00578at 619.725 kb on - strand, within PFR28_00578at 619.725 kb on - strand, within PFR28_00578at 619.768 kb on + strandat 619.787 kb on + strandat 619.787 kb on + strandat 619.787 kb on + strandat 619.787 kb on + strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.932 kb on - strandat 619.941 kb on + strandat 619.943 kb on + strandat 619.944 kb on - strandat 619.944 kb on - strandat 619.944 kb on - strandat 619.944 kb on - strandat 619.947 kb on + strandat 619.948 kb on - strandat 619.948 kb on - strandat 619.951 kb on + strandat 619.952 kb on - strandat 619.952 kb on - strandat 619.956 kb on - strandat 619.956 kb on - strandat 619.958 kb on + strandat 619.989 kb on + strandat 619.990 kb on - strandat 619.990 kb on - strandat 619.990 kb on - strandat 619.990 kb on - strandat 619.990 kb on - strandat 619.996 kb on - strandat 620.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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617,886 - PFR28_00576 0.17 -0.4
617,886 - PFR28_00576 0.17 +1.7
618,005 + PFR28_00576 0.27 -1.7
618,005 + PFR28_00576 0.27 -1.1
618,005 + PFR28_00576 0.27 +0.5
618,005 + PFR28_00576 0.27 +0.7
618,005 + PFR28_00576 0.27 -1.1
618,005 + PFR28_00576 0.27 -0.3
618,006 - PFR28_00576 0.27 -0.3
618,006 - PFR28_00576 0.27 -0.4
618,006 - PFR28_00576 0.27 -0.6
618,006 - PFR28_00576 0.27 -0.5
618,006 - PFR28_00576 0.27 +1.0
618,006 - PFR28_00576 0.27 -1.9
618,006 - PFR28_00576 0.27 -0.7
618,006 - PFR28_00576 0.27 +1.2
618,070 - PFR28_00576 0.33 -0.0
618,149 + PFR28_00576 0.39 -0.3
618,149 + PFR28_00576 0.39 -0.1
618,149 + PFR28_00576 0.39 -0.2
618,149 + PFR28_00576 0.39 +0.8
618,149 + PFR28_00576 0.39 +1.1
618,149 + PFR28_00576 0.39 -0.7
618,150 - PFR28_00576 0.39 -1.4
618,150 - PFR28_00576 0.39 +0.4
618,347 + PFR28_00576 0.56 -1.5
618,347 + PFR28_00576 0.56 +0.1
618,347 + PFR28_00576 0.56 -0.1
618,347 + PFR28_00576 0.56 +0.3
618,347 + PFR28_00576 0.56 +0.2
618,348 - PFR28_00576 0.56 +0.9
618,348 - PFR28_00576 0.56 -0.3
618,348 - PFR28_00576 0.56 -0.5
618,348 - PFR28_00576 0.56 +1.9
618,398 + PFR28_00576 0.60 -0.7
618,398 + PFR28_00576 0.60 +1.2
618,506 + PFR28_00576 0.69 +0.1
618,506 + PFR28_00576 0.69 -1.8
618,507 - PFR28_00576 0.69 -0.7
618,554 + PFR28_00576 0.73 -2.5
618,554 + PFR28_00576 0.73 +0.4
618,554 + PFR28_00576 0.73 -0.6
618,554 + PFR28_00576 0.73 +0.9
618,554 + PFR28_00576 0.73 +2.2
618,554 + PFR28_00576 0.73 -2.3
618,554 + PFR28_00576 0.73 +2.8
618,554 + PFR28_00576 0.73 -0.8
618,555 - PFR28_00576 0.73 -0.4
618,555 - PFR28_00576 0.73 -2.3
618,562 + PFR28_00576 0.74 -0.6
618,677 + PFR28_00576 0.84 +0.5
618,677 + PFR28_00576 0.84 +0.7
618,689 + PFR28_00576 0.85 -0.3
618,689 + PFR28_00576 0.85 -0.5
618,690 - PFR28_00576 0.85 -2.3
618,690 - PFR28_00576 0.85 -1.1
618,690 - PFR28_00576 0.85 -1.9
618,690 - PFR28_00576 0.85 -1.6
618,690 - PFR28_00576 0.85 -0.6
618,731 + PFR28_00576 0.88 -0.3
618,732 - PFR28_00576 0.88 -0.6
618,732 - PFR28_00576 0.88 +1.2
618,768 - -1.6
618,854 - +1.2
618,854 - -0.3
619,027 + PFR28_00577 0.47 +0.6
619,028 - PFR28_00577 0.48 +0.4
619,063 + PFR28_00577 0.59 +0.4
619,063 + PFR28_00577 0.59 -0.1
619,063 + PFR28_00577 0.59 -0.3
619,063 + PFR28_00577 0.59 +0.5
619,064 - PFR28_00577 0.59 +0.0
619,064 - PFR28_00577 0.59 +0.8
619,064 - PFR28_00577 0.59 -4.0
619,064 - PFR28_00577 0.59 +0.9
619,064 - PFR28_00577 0.59 -2.2
619,064 - PFR28_00577 0.59 +0.7
619,064 - PFR28_00577 0.59 +0.6
619,064 - PFR28_00577 0.59 +0.8
619,064 - PFR28_00577 0.59 -0.2
619,064 - PFR28_00577 0.59 -1.8
619,152 - PFR28_00577 0.88 -0.0
619,194 - +1.2
619,299 + +0.6
619,302 + +0.7
619,303 - +0.1
619,381 + PFR28_00578 0.12 -0.8
619,382 - PFR28_00578 0.12 -0.5
619,655 + PFR28_00578 0.71 -0.9
619,656 - PFR28_00578 0.71 -0.8
619,656 - PFR28_00578 0.71 -1.2
619,688 - PFR28_00578 0.78 +2.0
619,688 - PFR28_00578 0.78 -0.1
619,724 + PFR28_00578 0.86 -1.0
619,725 - PFR28_00578 0.86 -0.5
619,725 - PFR28_00578 0.86 -0.5
619,768 + -1.0
619,787 + +0.4
619,787 + -1.7
619,787 + -0.2
619,787 + -0.8
619,788 - +0.6
619,788 - +0.1
619,788 - +0.7
619,788 - +0.9
619,788 - -0.2
619,932 - -0.9
619,941 + -1.2
619,943 + -1.8
619,944 - +1.4
619,944 - -0.9
619,944 - +1.9
619,944 - -1.4
619,947 + -0.3
619,948 - -0.5
619,948 - -0.1
619,951 + +0.6
619,952 - -2.5
619,952 - -0.6
619,956 - -2.2
619,956 - +0.8
619,958 + -1.7
619,989 + +0.5
619,990 - +0.1
619,990 - +0.8
619,990 - -0.3
619,990 - -2.7
619,990 - -1.3
619,996 - -0.7
620,035 + -3.9

Or see this region's nucleotide sequence