Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11765

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS11755 and ABIE41_RS11760 are separated by 44 nucleotidesABIE41_RS11760 and ABIE41_RS11765 are separated by 7 nucleotidesABIE41_RS11765 and ABIE41_RS11770 are separated by 227 nucleotides ABIE41_RS11755: ABIE41_RS11755 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 2,409,410 to 2,410,105 _RS11755 ABIE41_RS11760: ABIE41_RS11760 - rhodanese-like domain-containing protein, at 2,410,150 to 2,410,572 _RS11760 ABIE41_RS11765: ABIE41_RS11765 - pyridoxal phosphate-dependent aminotransferase, at 2,410,580 to 2,411,782 _RS11765 ABIE41_RS11770: ABIE41_RS11770 - transglutaminase family protein, at 2,412,010 to 2,412,822 _RS11770 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -3 -2 -1 0 1at 2410.157 kb on + strandat 2410.463 kb on + strand, within ABIE41_RS11760at 2410.463 kb on + strand, within ABIE41_RS11760at 2412.029 kb on - strandat 2412.040 kb on + strandat 2412.123 kb on + strand, within ABIE41_RS11770at 2412.124 kb on - strand, within ABIE41_RS11770at 2412.210 kb on + strand, within ABIE41_RS11770at 2412.210 kb on + strand, within ABIE41_RS11770at 2412.211 kb on - strand, within ABIE41_RS11770at 2412.387 kb on + strand, within ABIE41_RS11770at 2412.388 kb on - strand, within ABIE41_RS11770at 2412.388 kb on - strand, within ABIE41_RS11770at 2412.454 kb on + strand, within ABIE41_RS11770at 2412.454 kb on + strand, within ABIE41_RS11770at 2412.455 kb on - strand, within ABIE41_RS11770at 2412.455 kb on - strand, within ABIE41_RS11770at 2412.455 kb on - strand, within ABIE41_RS11770at 2412.586 kb on + strand, within ABIE41_RS11770at 2412.586 kb on + strand, within ABIE41_RS11770at 2412.587 kb on - strand, within ABIE41_RS11770at 2412.652 kb on + strand, within ABIE41_RS11770at 2412.652 kb on + strand, within ABIE41_RS11770at 2412.652 kb on + strand, within ABIE41_RS11770at 2412.653 kb on - strand, within ABIE41_RS11770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
remove
2,410,157 + +0.1
2,410,463 + ABIE41_RS11760 0.74 -2.7
2,410,463 + ABIE41_RS11760 0.74 -0.1
2,412,029 - -0.0
2,412,040 + -0.5
2,412,123 + ABIE41_RS11770 0.14 -0.0
2,412,124 - ABIE41_RS11770 0.14 +0.2
2,412,210 + ABIE41_RS11770 0.25 -0.2
2,412,210 + ABIE41_RS11770 0.25 +1.7
2,412,211 - ABIE41_RS11770 0.25 -0.3
2,412,387 + ABIE41_RS11770 0.46 -0.2
2,412,388 - ABIE41_RS11770 0.46 +0.4
2,412,388 - ABIE41_RS11770 0.46 +0.1
2,412,454 + ABIE41_RS11770 0.55 -0.3
2,412,454 + ABIE41_RS11770 0.55 -0.6
2,412,455 - ABIE41_RS11770 0.55 +1.3
2,412,455 - ABIE41_RS11770 0.55 -0.2
2,412,455 - ABIE41_RS11770 0.55 -0.7
2,412,586 + ABIE41_RS11770 0.71 +0.1
2,412,586 + ABIE41_RS11770 0.71 +0.3
2,412,587 - ABIE41_RS11770 0.71 -0.0
2,412,652 + ABIE41_RS11770 0.79 -0.0
2,412,652 + ABIE41_RS11770 0.79 -3.4
2,412,652 + ABIE41_RS11770 0.79 +0.3
2,412,653 - ABIE41_RS11770 0.79 -0.1

Or see this region's nucleotide sequence