Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11725

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11715 and ABIE41_RS11720 are separated by 13 nucleotidesABIE41_RS11720 and ABIE41_RS11725 are separated by 61 nucleotidesABIE41_RS11725 and ABIE41_RS11730 are separated by 288 nucleotides ABIE41_RS11715: ABIE41_RS11715 - class I SAM-dependent methyltransferase, at 2,403,521 to 2,404,120 _RS11715 ABIE41_RS11720: ABIE41_RS11720 - LysE family translocator, at 2,404,134 to 2,404,760 _RS11720 ABIE41_RS11725: ABIE41_RS11725 - CAP domain-containing protein, at 2,404,822 to 2,405,385 _RS11725 ABIE41_RS11730: ABIE41_RS11730 - signal recognition particle protein, at 2,405,674 to 2,407,260 _RS11730 Position (kb) 2404 2405 2406Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2404.065 kb on + strandat 2404.066 kb on - strandat 2404.086 kb on + strandat 2404.086 kb on + strandat 2404.087 kb on - strandat 2404.185 kb on + strandat 2404.186 kb on - strandat 2404.301 kb on - strand, within ABIE41_RS11720at 2404.516 kb on + strand, within ABIE41_RS11720at 2404.672 kb on + strand, within ABIE41_RS11720at 2404.814 kb on - strandat 2404.925 kb on + strand, within ABIE41_RS11725at 2405.042 kb on + strand, within ABIE41_RS11725at 2405.043 kb on - strand, within ABIE41_RS11725at 2405.139 kb on + strand, within ABIE41_RS11725at 2405.140 kb on - strand, within ABIE41_RS11725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
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2,404,065 + +0.7
2,404,066 - +0.2
2,404,086 + +0.2
2,404,086 + +0.1
2,404,087 - +2.2
2,404,185 + -3.0
2,404,186 - +1.5
2,404,301 - ABIE41_RS11720 0.27 -2.4
2,404,516 + ABIE41_RS11720 0.61 -0.2
2,404,672 + ABIE41_RS11720 0.86 -1.7
2,404,814 - -0.3
2,404,925 + ABIE41_RS11725 0.18 -0.2
2,405,042 + ABIE41_RS11725 0.39 -0.2
2,405,043 - ABIE41_RS11725 0.39 -0.2
2,405,139 + ABIE41_RS11725 0.56 -0.3
2,405,140 - ABIE41_RS11725 0.56 -0.0

Or see this region's nucleotide sequence